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The effects of contrasted cropping systems have been studied on upland rice yield and N uptake in rainfed conditions: conventional tillage (CT) and CA with a mulch of maize or a legume (Stylosanthes or velvet bean). This study used the "Decision Support Systems for Agrotechnology Transfer" (DSSAT) crop growth model to quantify the soil N balance according to the season and the cropping system in rainfed, upland rice in the hillsides of the Malagasy highlands. The model gave interesting results but the challenge is now to evaluate the model in less contrasted experimental conditions in order to validate its use for N uptake and yield prediction in support to the optimization and design of new cropping systems.