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Scooped by
Gilbert C FAURE
December 27, 2013 10:35 AM
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is the most recent part of Immunology! It appeared less than 40 years ago, while systemic immunity exploded 60ย years ago. It is still a minor part of Immunology teaching and research, while the mucosal immune system is at the frontline of encounters with germs, antigens... in other words the environment. ย major keywords: > 450 posts IgAย http://www.scoop.it/t/mucosal-immunity?q=IgA > 125 posts toleranceย http://www.scoop.it/t/mucosal-immunity?q=tolerance > 400 posts : microbiomeย http://www.scoop.it/t/mucosal-immunity?q=microbiome ย july 2015: almost 2100 scoops, >1700 visitors, >3900 views november 2017 >10K views of >3300 scoops june 2020 >17.6K views, >5.5K visitors, ย >4.5K scoops may 2024 >22K views, >6.9 visitors,ย >5.2 scoops
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Scooped by
Gilbert C FAURE
January 7, 4:45 AM
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Research shows that even a single episode of binge drinking - about four drinks for women or five for men within two hours - can weaken the gut barrier, allowing #bacteria and #toxins to enter the bloodstream and trigger #inflammation, a process often referred to as โleaky gut.โ
โซ๏ธ Investigators at Beth Israel Deaconess Medical Center (BIDMC), in work published in Alcohol: Clinical and Experimental Research, found that short bursts of high-dose #alcohol recruit immune cells called #neutrophils to the upper small intestine, where they release damaging structures known as NETs that disrupt the gut lining.
โซ๏ธ NETs stands for Neutrophil Extracellular Traps. They are web-like structures made of #DNA, histones, and antimicrobial proteins that are released by neutrophils to trap and kill #microbes. While NETs are part of the bodyโs innate immune defense, they can also damage surrounding tissues when produced excessively or inappropriately - such as after binge alcohol exposure - by disrupting barriers like the gut lining, promoting inflammation, and allowing bacteria or toxins to leak into the bloodstream.
โซ๏ธ The study, led by Scott Minchenberg, MD, PhD, a clinical fellow in #gastroenterology and #hepatology at BIDMC, showed that breaking down these NETs with an enzyme reduced gut damage and bacterial leakage.
โซ๏ธ As noted by senior author Gyongyi Szabo MD, PhD, Chief Academic Officer at BIDMC and Beth Israel Lahey Health, these findings highlight an early inflammatory pathway linking binge drinking to gut and liver injury.
๐๏ธ See comments section for reference.
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Scooped by
Gilbert C FAURE
January 4, 3:51 AM
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Mucosal glycans: key drivers of the development of inflammatory bowel disease and a potential new therapeutic target - Nature Reviews Gastroenterology & Hepatology
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Scooped by
Gilbert C FAURE
January 1, 4:29 AM
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Une dรฉcouverte inattendue sur notre immunitรฉ ? Des chercheurs japonais rรฉvรจlent un rรดle peu explorรฉ de la salive.
๐ย Ce quโil faut savoir Une รฉquipe de lโUniversitรฉ de Tokyo a analysรฉ la salive de 476 volontaires. Leurs travaux, publiรฉs dans Nature Communications, identifient des fragments gรฉnรฉtiques jusquโici peu dรฉcrits, portรฉs par certaines bactรฉries de la bouche.
โก๏ธย Ces fragments, appelรฉs Inocles, sont prรฉsents chez prรจs de 3 personnes sur 4. Il sโagit de petits morceaux dโADN supplรฉmentaires, distincts de lโADN principal des bactรฉries.
Ils ne sont pas indispensables ร leur survie, mais semblent leur confรฉrer des capacitรฉs dโadaptation accrues, notamment pour faire face aux contraintes constantes de lโenvironnement buccal (alimentation, aciditรฉ, hygiรจneโฆ).
๐ย Pourquoi est-ce important ? Parce que la bouche nโest pas quโun simple point de passage. Cโest un รฉcosystรจme biologique dense et actif, oรน : -un microbiote complexe cohabite en permanence -certaines bactรฉries interagissent avec notre organisme -ces interactions pourraient รชtre associรฉes ร des variations de la rรฉponse immunitaire
Ce que les chercheurs ont observรฉ chez les personnes porteuses dโInocles : -une activitรฉ immunitaire diffรฉrente -notamment au niveau de cellules clรฉs de lโimmunitรฉ adaptative Autrement dit, ce qui se passe dans la bouche pourrait influencer la maniรจre dont notre systรจme immunitaire se rรฉgule.
Quels liens ont-ils fait avec le cancer ? Les chercheurs ont รฉgalement observรฉ que certaines personnes atteintes de certains cancers prรฉsentaient moins dโInocles. Il ne sโagit ni dโun lien causal, ni dโun traitement, mais dโune piste de recherche encore trรจs prรฉcoce.
โ ๏ธย ร ce stade, ces rรฉsultats sont observationnels. Ils ouvrent de nouvelles questions, mais nรฉcessitent encore de nombreuses รฉtudes pour รชtre confirmรฉs. | 37 comments on LinkedIn
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Scooped by
Gilbert C FAURE
December 27, 2025 10:43 AM
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Head and neck #cancer is the seventh most common cancer worldwide.
This JAMA Review summarizes the epidemiology, clinical presentation, diagnosis, and treatment of head and neck squamous cell carcinomas (#HNSCC) of the upper aerodigestive tract.
https://ja.ma/4q6rxjn
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Scooped by
Gilbert C FAURE
December 21, 2025 4:08 AM
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Just as a curiosity. "Chris Buck stands barefoot in his kitchen holding a glass bottle of unfiltered Lithuanian farmhouse ale. He swirls the bottle gently to stir up a fingerbreadth blanket of yeast and pours the turbulent beer into a glass mug.
Buck raises the mug and sips. โCloudy beer. Delightful!โ
He has just consumed what may be the worldโs first vaccine delivered in a beer. It could be the first small sip toward making vaccines more palatable and accessible to people around the world. Or it could fuel concerns about the safety and effectiveness of vaccines. Or the idea may go nowhere. No matter the outcome, the story of Buckโs unconventional approach illustrates the legal, ethical, moral, scientific and social challenges involved in developing potentially life-saving vaccines." https://lnkd.in/gdPZRTsV
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Scooped by
Gilbert C FAURE
December 18, 2025 4:23 AM
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Now published open access. โSince the early 1950s, national statisticians have regarded unpaid work as non-economic, excluding it from GDP. Feminist scholars argue this exclusion reflects a gender-biased view of progress that renders womenโs non-market productivity invisible. As what gets measured drives policy priorities and resource allocation, breastfeeding highlights the need to account for womenโs unpaid care work in economic statistics. This paper advances the Beyond GDP agenda by demonstrating how market-derived prices can improve the measurement and recognition of womenโs lactation labour.โ
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Scooped by
Gilbert C FAURE
December 12, 2025 1:45 PM
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We are proud to share newly published work from the Sjรถgrenโs Foundation led by Foundation authors Kristie Cox, PhD and Matt Makara, MPH, now available in the Journal of Dental Research. ย This review examines the connection between oral pathology and systemic disease in Sjรถgrenโs disease, the current challenges in diagnosis and treatment, and the importance of integrated models of care that address both oral and systemic manifestations. ย Highlights from the publication: โข A strong connection between oral pathology and systemic disease, including neuropathies, exists with Sjรถgrenโs disease โข Current diagnostic and treatment paradigms are insufficient and there is a need for advanced and integrated approaches โข A multidisciplinary and patient centered model may improve outcomes and quality of life ย Read the abstract: https://lnkd.in/e2iBfjcg
See Figure 1 from the article on Salivary Gland Pathophysiology: https://lnkd.in/eQaQUSjD
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Scooped by
Gilbert C FAURE
December 5, 2025 7:10 AM
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๐ก๐ฒ๐ ๐ฅ๐ฒ๐๐ฒ๐ฎ๐ฟ๐ฐ๐ต: ๐ง ๐ฐ๐ฒ๐น๐น๐ ๐ถ๐ป ๐๐ถ๐๐๐๐ฒ๐ ๐ฑ๐ถ๐ณ๐ณ๐ฒ๐ฟ ๐บ๐ฎ๐ฟ๐ธ๐ฒ๐ฑ๐น๐ ๐ณ๐ฟ๐ผ๐บ ๐๐ต๐ผ๐๐ฒ ๐ถ๐ป ๐ฏ๐น๐ผ๐ผ๐ฑ - ๐ฟ๐ฒ๐๐ต๐ฎ๐ฝ๐ถ๐ป๐ด ๐ต๐ผ๐ ๐๐ฒ ๐ฒ๐๐ฎ๐น๐๐ฎ๐๐ฒ ๐๐ฎ๐ฐ๐ฐ๐ถ๐ป๐ฒ๐ ๐ฎ๐ป๐ฑ ๐ถ๐บ๐บ๐๐ป๐ผ๐๐ต๐ฒ๐ฟ๐ฎ๐ฝ๐ถ๐ฒ๐
A new study in Immunity from Washington University School of Medicine in St. Louis reveals that #Tcells residing in tissues such as the #tonsils differ significantly from T cells circulating in the #blood. This challenges long-standing assumptions in #immunology and could transform how we assess immune responses to #vaccines, #infections, and #immunotherapies.
In one of the largest single-cell datasets of human T cells ever generated, researchers analyzed 5.7 million T cells from paired tonsil tissue and blood samples of 10 donors. Led by Dr. Naresha Saligrama, the team found profound differences in T cell subtypes and functions between compartments even within the same individual.
Why does this matter?
โช๏ธ Less than 2% of the bodyโs T cells are actually in the blood, yet blood is currently the standard sample type used for immune monitoring. โช๏ธMany specialized T cells - including resident memory T cells and T follicular helper cells - exist almost exclusively in tissues, not blood. โช๏ธTissue location can shape a T cellโs phenotype and its ability to recognize specific antigens.
๐ Significance
This study highlights the need for a more tissue-aware approach to evaluating immune responses. Relying solely on blood samples may overlook critical populations of T cells that drive protection, disease progression, or therapeutic responses. Future vaccine design, #immunotherapy evaluation, and clinical diagnostics may need to incorporate location-specific immune profiling to truly understand human #immunity.
๐๏ธ See comments section for reference.
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Scooped by
Gilbert C FAURE
November 29, 2025 5:07 AM
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A toxin-secreting gut bacterium may fuel ulcerative colitis by killing protective immune cells that maintain intestinal homeostasis, according to a new study in Science.
The findings suggest potential for new treatment strategies.
๐: https://scim.ag/4oXOowT #SciencePerspective: https://scim.ag/4a69oN6
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Scooped by
Gilbert C FAURE
November 19, 2025 6:31 AM
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Scooped by
Gilbert C FAURE
November 18, 2025 8:13 AM
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The appendix is a small, worm-like diverticulum of the caecum, potentially having a role in regulating intestinal microbiota and immunology. Inflammation of the appendix, acute appendicitis, is one of the most common reasons for acute abdominal pain in children and adults and surgical emergency visits worldwide. The pathophysiology of appendicitis is still poorly understood. During the past decade, evidence has overturned the long-lasting dogma that all appendicitis cases have a clinical course inevitably progressing to perforation and life-threatening peritonitis unless operated upon in a timely manner. Instead, this natural course occurs only in a smaller proportion of patients, for whom emergency appendectomy remains mandatory. Advances in diagnostic accuracy following utilization of clinical scoring systems and imaging has enabled more accurate pre-interventional assessment of appendicitis disease severity. While some patients still require urgent surgery, the majority can be treated successfully with antibiotics, and in some the disease has even been shown to resolve spontaneously. This has confirmed the notion of at least two different forms of appendicitis: non-perforating and perforating, often referred to as uncomplicated and complicated appendicitis. Unified definitions of these forms are still undergoing rigorous research and debate, hampering both comparison of different studies and the establishment of unified treatment guidelines. The current knowledge on the safe and effective outcomes of non-operative treatment alternatives has further underlined the need for standardized uniform definitions of appendicitis severity and assessment of the success of two fundamentally different treatment options. Inflammation of the appendix, acute appendicitis, is one of the most common reasons for acute abdominal pain in children and adults and surgical emergency visits worldwide. In this Primer, Salminen and colleagues review the epidemiology, pathophysiology, diagnosis and management of appendicitis, and discuss future research areas.
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Scooped by
Gilbert C FAURE
November 16, 2025 4:46 AM
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Advances and prospects of respiratory mucosal vaccines: mechanisms, technologies, and clinical applications - npj Vaccines
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Scooped by
Gilbert C FAURE
January 8, 1:43 PM
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The gut virome is a complex ecosystem characterized by the interplay of diverse viral entities, predominantly bacteriophages and eukaryotic viruses. The gut virome has a critical role in human health by shaping microbial community profiles, modulating host immunity and influencing metabolic processes. Different viral metagenomics approaches have revealed the remarkable diversity of the gut virome, showing individual-specific patterns that evolve over time and adapt dynamically to environmental factors. Perturbations in this community are increasingly associated with chronic immune and inflammatory conditions, metabolic disorders and neurological conditions, highlighting its potential as a diagnostic biomarker and therapeutic target. The early-life gut virome is particularly influential in establishing lifelong health trajectories through its interactions with diet, immune pathways and others, thereby contributing to inflammatory and metabolic regulation. This Review synthesizes current knowledge of gut virome composition, dynamics and functional relevance, critically evaluating evidence distinguishing causal from correlative roles in disease pathogenesis. The interactions of the virome with other microbiome components and host immunity are examined, and emerging translational applications, including phage therapy and biomarker development, are discussed. Integrating these insights while acknowledging methodological challenges provides a comprehensive framework for understanding the complex roles of the gut virome in health and disease. The gut virome is a complex ecosystem and has a critical role in human health. This Review outlines gut virome composition and functional relevance, and its role in human health and disease. Methodological challenges in advancing our knowledge of the gut virome are also discussed.
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Scooped by
Gilbert C FAURE
January 5, 4:21 AM
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IgA friends at mucossl level and foes at systemic levelโฆ a new proofโฆ
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Scooped by
Gilbert C FAURE
January 2, 5:14 AM
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I thought a banana was loaded with chemicals.
Thatโs until I found the ingredient list for human breast milk.
If you saw this list on a label, you might think itโs never been anywhere near a human.
And if you go by how theyโre pronouncedโ you might be ready to starve an infant.
Good thing we donโt have anyone silly enough to believe that these chemicals are a bad thingโฆ
โโ-
HUMAN MILK INGREDIENT LIST: Water, lactose, triacylglycerols [oleic acid, palmitic acid, linoleic acid, alpha-linolenic acid, stearic acid, lauric acid, myristic acid], phospholipids [sphingomyelin, phosphatidylcholine], cholesterol, free fatty acids [docosahexaenoic acid (DHA), arachidonic acid (ARA)]),
Oligosaccharides (2โฒ-fucosyllactose, lacto-N-tetraose, lacto-N-neotetraose, 3โฒ-sialyllactose, 6โฒ-sialyllactose, fucosylated and sialylated oligosaccharides),
Milk Proteins (ฮฑ-lactalbumin, lactoferrin, secretory immunoglobulin A, serum albumin, lysozyme, ฮฒ-casein),
Minerals (potassium, calcium, chloride, phosphorus, sodium, magnesium, iron, zinc, iodine, copper, selenium, manganese),
Free Amino Acids (glutamic acid, glutamine, taurine, alanine, glycine, serine, threonine, valine, leucine, isoleucine, lysine, methionine, phenylalanine, tyrosine, tryptophan, cysteine, histidine),
Vitamins (vitamin A [retinol], vitamin D, vitamin E [ฮฑ-tocopherol], vitamin K, vitamin C [ascorbic acid], thiamin [B1], riboflavin [B2], niacin [B3], pantothenic acid [B5], vitamin B6, folate [B9], vitamin B12),
Enzymes (bile saltโstimulated lipase, amylase, proteases),
Proprietary Blend (nucleotides, choline, phosphocholine, carnitine, inositol, polyamines),
Hormones & Growth Factor Blend (insulin, leptin, adiponectin, epidermal growth factor, insulin-like growth factor-1, transforming growth factor-ฮฒ),
Cytokines & Immune Factor Blend (MicroRNAs, Living Cells (leukocytes, epithelial cells, stem-like cells)).
โ-
#mammals #foodchemistry #foodscience #humanchemicalfactories #sciencerules | 80 comments on LinkedIn
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Scooped by
Gilbert C FAURE
December 29, 2025 6:08 AM
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Efficacy, Immunogenicity, and Safety of the Live-Attenuated Intranasal Pertussis Vaccine BPZE1: A Randomised, Placebo-Controlled Phase 2b Human Challenge Study in the UK:
The resurgence of pertussis is largely attributed to suboptimal vaccination coverage, particularly in countries that rely exclusively on acellular vaccines, which fail to induce mucosal immunity and generate minimal indirect (herd) protection. Consequently, sustained coverage levels above 95% are required to control transmission. BPZE1 is a live-attenuated Bordetella pertussis strain developed for intranasal administration, engineered through the genetic inactivation or deletion of three key virulence factorsโpertussis toxin (PT), dermonecrotic toxin (DNT), and tracheal cytotoxin (TCT)โto safely prevent whooping cough while closely mimicking natural infection. This vaccine elicits robust Th1-biased cellular immunity alongside strong humoral responses. In a phase 2b human challenge study, intranasal BPZE1 vaccination prevented or markedly reduced infection following exposure to virulent B. pertussis, supporting its potential as a promising next-generation pertussis vaccine. Given its favorable safety profile, large-scale phase 3 clinical trials are warranted to confirm these findings and further assess its public health impact.
#pertussis #pertussisvaccines #mucosalvaccines #nasalvaccines
https://lnkd.in/gukzy-aE
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Scooped by
Gilbert C FAURE
December 24, 2025 8:10 AM
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A mother's touch: microbial guardians of early immune imprinting Trends in Immunology, Month 2025, Vol. xx, No. xx https://lnkd.in/gJuDgB4B
Group 3 Innate Lymphoid Cells (ILC3s) are a firmly established and universally accepted concept in immunology. They are considered the "innate counterparts" to T helper 17 (Th17) cells, as both share the master transcription factor, Retinoid-Related Orphan Receptor gamma t, and produce the cytokines IL-17 and IL-22. This review: ยทย ย ย ย ย ย The Biological Paradigm: Infants are born with a pre-established "immune memory" despite developing in a relatively sterile environment. This in utero priming is driven by the maternal immune system and microbiota through a multi-modal exchange involving maternal microchimeric cells, IgG transfer, and microbiota-derived metabolites/antigens. ยทย ย ย ย ย ย Mechanisms of Action: Recent murine and human data demonstrate that maternal microbial products cross the placental barrier to actively fine-tune the fetal immune system. This results in antigen-specific immunological memory and epigenetic imprinting, effectively "programming" fetal immune cells before birth. ยทย ย ย ย ย ย Clinical Significance: This delicate priming process is highly susceptible to external stressors. Maternal dysbiosis, driven by diet, antibiotics, or infection, can disrupt these pathways, leading to aberrant immune development. Such prenatal perturbations are increasingly linked to the pathogenesis of autoimmune and immune-mediated disorders later in life.
Figure: Maternal factors that shape fetal immune priming. During gestation, microbial and dietary antigens are trafficked across the placenta, partially via neonatal Fc receptor (FcRn)-mediated transport of immune complexes. These antigens are taken up by fetal dendritic cells (DCs) for priming of T cells, which are predisposed to differentiate into regulatory T cells (Tregs), thus establishing a level of immune tolerance toward commensals and dietary antigens before birth. Microbiota-associated metabolites, such as short-chain fatty acids (SCFAs) and tryptophan (Trp) derivatives, also cross the placenta and contribute to Treg priming, while maternal microchimeric cells take up residence in fetal tissues and promote tolerance of maternal antigens. Maternal interleukin (IL)-10 further promotes a tolerogenic immune milieu in the fetus, while, in situations of maternal immune activation (MIA), cytokines, such as IL-6 and IL-17, may skew newly activated T cells toward a more inflammatory profile, and alter the development of the intestinal epithelium and central nervous system. Dotted lines indicate pathways that are speculative.
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Scooped by
Gilbert C FAURE
December 20, 2025 2:17 AM
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Scooped by
Gilbert C FAURE
December 17, 2025 4:30 AM
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The concept of structural immunity, as defined in this Perspective, posits that the first line of immune defence against foreign agents and tissue damage involves the preventative, physical reinforcement of tissue barriers and that this fundamental task can be directly or indirectly regulated by immune cells. Indeed, several types of leukocytes can help build protective barriers when required, potentially either by depositing matrix components themselves in certain circumstances or, more generally, by interactions with canonical structural cells and the existing extracellular matrix. This concept of structural functions of immune cells challenges the rigidity with which mammalian tissue organization and immune defence have been traditionally compartmentalized. Although there is strong momentum in the evidence for structural immunity that has been acquired so far, the field lacks a comprehensive overview of these data as well as a critical evaluation of this concept. Here, we place independent findings from several groups into a working model of immune cells as the architects of tissue barriers, to present a framework on which new concepts and findings in this area can develop. This Perspective presents a framework of โstructural immunityโ that positions immune cells as architects of tissue structure. Beyond their roles in antimicrobial defence, we posit that immune cells contribute to tissue homeostasis by guiding structural composition and, in some cases, directly building barrier components.
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Scooped by
Gilbert C FAURE
December 9, 2025 4:01 AM
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โ๏ธEn 2008, la biologiste Katie Hinde a dรฉcouvert quelque chose que la science avait ignorรฉ pendant des siรจcles : le lait maternel nโest pas une recette fixe, cโest un message en perpรฉtuel changement.
En รฉtudiant des macaques en Californie, Hinde remarqua un motif รฉtrange. Si la mรจre avait un petit mรขle, son lait รฉtait plus รฉpais, riche en graisses et en protรฉines (un carburant ร haut indice dโoctane). Si elle avait une petite femelle, le lait รฉtait plus abondant et chargรฉ en calcium. Comment le corps de la mรจre savait-il modifier la formule chimique selon le sexe du bรฉbรฉ ?
Cela lโa conduite ร dรฉcouvrir le mรฉcanisme le plus fascinant de la biologie humaine : le ยซ flux rรฉtrograde ยป.
Pendant des annรฉes, nous avons cru que le lait allait dans une seule direction (de la mรจre ร lโenfant). Nous avions tort. Lorsquโun bรฉbรฉ tรจte, le vide crรฉรฉ aspire une petite quantitรฉ de salive du bรฉbรฉ ร lโintรฉrieur du mamelon de la mรจre. Cโest lร que se produit la magie : le tissu mammaire analyse cette salive. Cโest un scanner biologique.
Si la salive contient des signaux indiquant que le bรฉbรฉ a de la fiรจvre ou une infection, le corps de la mรจre commence ร fabriquer des anticorps spรฉcifiques ร cette maladie en quelques heures.
Si le bรฉbรฉ est stressรฉ, le lait modifie ses niveaux hormonaux (comme le cortisol) pour influencer son tempรฉrament. Le lait change entre le matin et le soir. Il change si le bรฉbรฉ est malade. Il change selon quโil est garรงon ou fille.
Comme lโa conclu Hinde : ยซ Le lait maternel est nourriture, mรฉdicament et signal ยป. Cโest le systรจme de communication le plus sophistiquรฉ de la nature, une conversation silencieuse entre deux corps que mรชme la technologie moderne nโa pas encore rรฉussi ร reproduire entiรจrement.
Validation historique et scientifique, Katie Hinde, PhD โ Laboratoire de lactation comparรฉe, Arizona State University.
vanhille.fr | 100 comments on LinkedIn
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Scooped by
Gilbert C FAURE
December 3, 2025 3:48 AM
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Gut Phageome: A New Frontier for Clinicians
A new Nature study using long-read metagenomics reveals that the human gut microbiome is far more dynamic than we thought
https://lnkd.in/dnVnetzX
Most gut bacteriophages (phages) are integrated in bacterial genomes, but a meaningful fraction are gained, lost, or even jump across bacterial species over time.
This means the gut microbiome is not just a community of bacteria - itโs an evolving genetic ecosystem shaped by phageโbacteria interactions.
Why it matters for clinical practice
Emerging evidence suggests that phage dynamics can influence:
โข microbiome stability and dysbiosis โข inflammation and immune tone โข responses to antibiotics, diet, and microbiome-targeted therapies
Phage-aware diagnostics and therapeutics (including targeted phage cocktails) are already entering early clinical and translational research.
Take-home for clinicians:
1. The virome matters: Gut phages may become essential in interpreting microbiome results and understanding dysbiosis.
2. Therapies will evolve: Next-generation probiotics, FMT, and phage therapy will likely consider phageโbacteria interactions.
3. Expect personalization: Phage patterns may soon help stratify patients and guide individualized microbiome interventions.
Understanding the phageome is becoming a key part of understanding our gut
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Scooped by
Gilbert C FAURE
November 20, 2025 9:40 AM
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I believe this is one of the most important papers in microbiome science.
This new review in Neuron (Mitchell et al, 2025) systematically dismantles the gut microbiome-autism hypothesis through a critical assessment of published papers.
I was honestly shocked by the numbers: Despite 100+ papers per year and $20-25M in annual NIH funding since 2018, the most cited studies have tiny sample sizes (n=20 for some), uncorrected multiple testing, and contradictory findings. Some report higher microbial diversity in autism, others lower, many find no difference. The taxa they report are inconsistent. When properly analyzed with sibling controls and adequate statistical power, associations largely disappear.
The mouse model data is equally troubling. For example, a 2019 Cell paper claimed fecal transplants from autistic donors induced "autism-like behaviors" in mice. But when reanalyzed with proper statistics, the effects vanished. And it is really not clear how mouse behavior can model human autism.
And these are not obscure papers - they are published in the most high profile journals and have thousands of citations each.
Maybe it is not surprising that randomized controlled trials of probiotics show no consistent benefit for autism.
As a result, we're watching well-intentioned science fuel a billion dollar "wellness" industry selling unproven interventions to vulnerable families.
As a microbiome scientist, this really troubles me. Excellent research IS being done, and the microbiome holds real promise as a diagnostic and therapeutic tool. But these overhyped, methodologically weak studies cast a shadow over our entire field.
The solution, in my opinion โ and completely I agree with the authors on this โ is to adopt the rigor that transformed human genomics: pre-specified hypotheses, adequate power, standardized protocols and pipelines, large sample sizes, statistical robustness, replication, and above all: resisting the hype machine.
#microbiome #autism #scientificrigor #reproducibility #clinicaltrials | 36 comments on LinkedIn
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Scooped by
Gilbert C FAURE
November 19, 2025 4:55 AM
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The Gram-negative bacterium Bordetella pertussis causes whooping cough (pertussis), a severe respiratory disease, especially in young children, which is resurgent despite high vaccine coverage. The current acellular pertussis vaccine prevents severe disease but does not prevent nasal infection with B. pertussis. This parenterally delivered vaccine induces potent circulating antibody responses but limited respiratory tissue-resident memory T cells and IgA responses. Here we developed a vaccine approach based on respiratory delivery of antibiotic-inactivated B. pertussis (AIBP). Ciprofloxacin-treated B. pertussis potently activated antigen-presenting cells to drive T cell responses. AIBP immunization via aerosol or intranasal administration conferred a high level of protection against lung and nasal infection. The AIBP vaccine induced B. pertussis-specific interleukin (IL)-17-producing CD4 tissue-resident memory T cells that recruited neutrophils to the respiratory tract. Protection was abrogated by depletion of CD4 T cells or neutralization of IL-17 in mice. Unlike a parenterally delivered whole-cell pertussis vaccine, which induced high levels of serum IL-1ฮฒ, IL-6, tumour necrosis factor and C-reactive protein, aerosol immunization with the AIBP vaccine did not promote systemic pro-inflammatory responses. We present preclinical evidence of a safe and effective respiratory-delivered vaccine platform for inducing T cell-mediated sterilizing immunity against a respiratory pathogen. In this preclinical study, the authors find that respiratory immunization with an antibiotic-treated bacterial vaccine is a highly effective approach for inducing tissue-resident memory T cells that protect against lung and nasal infection with Bordetella pertussis.
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Gilbert C FAURE
November 18, 2025 7:29 AM
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Scooped by
Gilbert C FAURE
November 13, 2025 6:22 AM
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A team of Trinity College Dublin researchers has developed a new form of vaccine that could transform how we are protected from respiratory infections and reduce the chance of passing on whooping cough.
It could mean a whooping cough vaccine, currently given by way of injection, could be administered nasally to children and young ยญbabies whose lives are more at risk from the disease.
The research was led by Prof Kingston Mills (pictured) and Dr Seyed Davoud Jazayeri from the college's School of Biochemistry and Immunology. โWeโve applied our understanding of protective immune pathways to engineer a fundamentally different kind of vaccine. By stimulating immunity where infections begin, we can offer stronger protection and potentially interrupt community transmission,โ Prof Mills said
Whoopingcough can sound like an old fashioned disease but Ireland has had a resurgence in whooping cough, with a record 713 cases reported last year. More than one in four of those infected needed hospital treatment.
The landmark study, published in Nature Microbiology, found the experimental vaccine in pre-clinical studies managed complete protection against infection of the lungs and nasal cavity. The research was initially funded through a Research Ireland and is now advancing under the Arc Hub for Therapeutics.
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