Plant and Seed Biology
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Scooped by Loïc Lepiniec
March 12, 2014 4:11 AM
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The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression - Coego - 2014 - The Plant Journal -

The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression - Coego - 2014 - The Plant Journal - | Plant and Seed Biology | Scoop.it
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Scooped by Loïc Lepiniec
March 8, 2014 5:26 AM
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Evolution of transcription factor binding in metazoans: mechanisms and functional implications : Nature Reviews Genetics

Evolution of transcription factor binding in metazoans: mechanisms and functional implications : Nature Reviews Genetics | Plant and Seed Biology | Scoop.it
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Scooped by Loïc Lepiniec
March 6, 2014 3:54 AM
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Synthetic nucleases for genome engineering in plants: prospects for a bright future - Puchta - 2013 - The Plant Journal

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Scooped by Loïc Lepiniec
March 5, 2014 11:10 AM
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Viruses Reconsidered | The Scientist Magazine®

Viruses Reconsidered | The Scientist Magazine® | Plant and Seed Biology | Scoop.it
The discovery of more and more viruses of record-breaking size calls for a reclassification of life on Earth.
 
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Scooped by Loïc Lepiniec
March 1, 2014 11:12 AM
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Eight types of stem cells in the life cycle of the moss Physcomitrella patens

Eight types of stem cells in the life cycle of the moss Physcomitrella patens | Plant and Seed Biology | Scoop.it

Stem cells self-renew and produce cells that differentiate to become the source of the plant body. The moss Physcomitrella patens forms eight types of stem cells during its life cycle and serves as a useful model in which to explore the evolution of such cells. The common ancestor of land plants is inferred to have been haplontic and to have formed stem cells only in the gametophyte generation. A single stem cell would have been maintained in the ancestral gametophyte meristem, as occurs in extant basal land plants. During land plant evolution, stem cells diverged in the gametophyte generation to form different types of body parts, including the protonema and rhizoid filaments, leafy-shoot and thalloid gametophores, and gametangia formed in moss. A simplex meristem with a single stem cell was acquired in the sporophyte generation early in land plant evolution. Subsequently, sporophyte stem cells became multiple in the meristem and were elaborated further in seed plant lineages, although the evolutionary origin of niche cells, which maintain stem cells is unknown. Comparisons of gene regulatory networks are expected to give insights into the general mechanisms of stem cell formation and maintenance in land plants and provide information about their evolution. P. patens develops at least seven types of simplex meristem in the gametophyte and at least one type in the sporophyte generation and is a good material for regulatory network comparisons. In this review, we summarize recently revealed molecular mechanisms of stem cell initiation and maintenance in the moss.

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Scooped by Loïc Lepiniec
February 25, 2014 5:17 PM
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Endosperm breakdown in Arabidopsis requires heterodimers of the basic helix-loop-helix proteins ZHOUPI and INDUCER OF CBP EXPRESSION 1

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Rescooped by Loïc Lepiniec from MycorWeb Plant-Microbe Interactions
February 24, 2014 3:59 AM
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CYCLOPS, A DNA-Binding Transcriptional Activator, Orchestrates Symbiotic Root Nodule Development

CYCLOPS, A DNA-Binding Transcriptional Activator, Orchestrates Symbiotic Root Nodule Development | Plant and Seed Biology | Scoop.it

Nuclear calcium oscillations are a hallmark of symbiotically stimulated plant root cells. Activation of the central nuclear decoder, calcium- and calmodulin-dependent kinase (CCaMK), triggers the entire symbiotic program including root nodule organogenesis, but the mechanism of signal transduction by CCaMK was unknown. We show that CYCLOPS, a direct phosphorylation substrate of CCaMK, is a DNA-binding transcriptional activator. Two phosphorylated serine residues within the N-terminal negative regulatory domain of CYCLOPS are necessary for its activity. CYCLOPS binds DNA in a sequence-specific and phosphorylation-dependent manner and transactivates the NODULE INCEPTION (NIN) gene. A phosphomimetic version of CYCLOPS was sufficient to trigger root nodule organogenesis in the absence of rhizobia and CCaMK. CYCLOPS thus induces a transcriptional activation cascade, in which NIN and a heterotrimeric NF-Y complex act in hierarchical succession to initiate symbiotic root nodule development


Via Francis Martin
Scooped by Loïc Lepiniec
February 20, 2014 1:55 AM
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Mapping the Epigenetic Basis of Complex Traits

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Scooped by Loïc Lepiniec
February 18, 2014 9:03 AM
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Complexity and robustness of the flavonoid transcriptional regulatory network revealed by comprehensive analyses of MYB–bHLH–WDR complexes and their targets in Arabidopsis seed - Xu - 2013 - New Ph...

Complexity and robustness of the flavonoid transcriptional regulatory network revealed by comprehensive analyses of MYB–bHLH–WDR complexes and their targets in Arabidopsis seed - Xu - 2013 - New Ph... | Plant and Seed Biology | Scoop.it
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Scooped by Loïc Lepiniec
February 14, 2014 1:50 AM
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Leaf Shape Evolution Through Duplication, Regulatory Diversification, and Loss of a Homeobox Gene

Leaf Shape Evolution Through Duplication, Regulatory Diversification, and Loss of a Homeobox Gene | Plant and Seed Biology | Scoop.it
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Scooped by Loïc Lepiniec
February 4, 2014 1:23 AM
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PLOS Computational Biology: A Division in PIN-Mediated Auxin Patterning during Organ Initiation in Grasses

PLOS Computational Biology: A Division in PIN-Mediated Auxin Patterning during Organ Initiation in Grasses | Plant and Seed Biology | Scoop.it
PLOS Computational Biology is an open-access
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Scooped by Loïc Lepiniec
January 30, 2014 4:13 PM
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Cell - Structural Basis for DNA Binding Specificity by the Auxin-Dependent ARF Transcription Factors

Cell - Structural Basis for DNA Binding Specificity by the Auxin-Dependent ARF Transcription Factors | Plant and Seed Biology | Scoop.it
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Scooped by Loïc Lepiniec
January 24, 2014 7:08 AM
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A Peptide Hormone and Its Receptor Protein Kinase Regulate Plant Cell Expansion

Plant cells are immobile; thus, plant growth and development depend on cell expansion rather than cell migration. The molecular mechanism by which the plasma membrane initiates changes in the cell expansion rate remains elusive. We found that a secreted peptide, RALF (rapid alkalinization factor), suppresses cell elongation of the primary root by activating the cell surface receptor FERONIA in Arabidopsis thaliana. A direct peptide-receptor interaction is supported by specific binding of RALF to FERONIA and reduced binding and insensitivity to RALF-induced growth inhibition in feronia mutants. Phosphoproteome measurements demonstrate that the RALF-FERONIA interaction causes phosphorylation of plasma membrane H+–adenosine triphosphatase 2 at Ser899, mediating the inhibition of proton transport. The results reveal a molecular mechanism for RALF-induced extracellular alkalinization and a signaling pathway that regulates cell expansion.

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Scooped by Loïc Lepiniec
March 10, 2014 5:32 PM
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Photoperiodic Control of the Floral Transition through a Distinct Polycomb Repressive Complex

Photoperiodic Control of the Floral Transition through a Distinct Polycomb Repressive Complex | Plant and Seed Biology | Scoop.it
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Rescooped by Loïc Lepiniec from MycorWeb Plant-Microbe Interactions
March 7, 2014 1:42 AM
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Mapping the Epigenetic Basis of Complex Traits

Mapping the Epigenetic Basis of Complex Traits | Plant and Seed Biology | Scoop.it

Quantifying the impact of heritable epigenetic variation on complex traits is an emerging challenge in population genetics. Here, we analyze a population of isogenic Arabidopsis lines that segregate experimentally induced DNA methylation changes at hundreds of regions across the genome. We demonstrate that several of these differentially methylated regions (DMRs) act as bona fide epigenetic quantitative trait loci (QTLepi), accounting for 60 to 90% of the heritability for two complex traits, flowering time and primary root length. These QTLepi are reproducible and can be subjected to artificial selection. Many of the experimentally induced DMRs are also variable in natural populations of this species and may thus provide an epigenetic basis for Darwinian evolution independently of DNA sequence changes.


Via Francis Martin
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Scooped by Loïc Lepiniec
March 5, 2014 11:15 AM
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Epigenetics: The sins of the father

Epigenetics: The sins of the father | Plant and Seed Biology | Scoop.it
The roots of inheritance may extend beyond the genome, but the mechanisms remain a puzzle.
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Scooped by Loïc Lepiniec
March 4, 2014 5:35 PM
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Craig Venter Starts DNA-Scanning Company to Boost Longevity (1) - Businessweek

Craig Venter Starts DNA-Scanning Company to Boost Longevity (1) - Businessweek | Plant and Seed Biology | Scoop.it
J. Craig Venter, the man who raced
the U.S. government to sequence the first human genome, has a
new goal: Help everyone live to 100, in good health.
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Scooped by Loïc Lepiniec
February 28, 2014 3:30 AM
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Cell Surface ABP1-TMK Auxin-Sensing Complex Activates ROP GTPase Signaling

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Scooped by Loïc Lepiniec
February 25, 2014 9:52 AM
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Developmental Cell - A Regulatory Framework for Shoot Stem Cell Control Integrating Metabolic, Transcriptional, and Phytohormone Signals

Developmental Cell - A Regulatory Framework for Shoot Stem Cell Control Integrating Metabolic, Transcriptional, and Phytohormone Signals | Plant and Seed Biology | Scoop.it

The bHLH factor HECATE1 is a direct target of the plant stem cell regulator WUSCHELHECATE1 interacts with other bHLH factors to control stem cell proliferationWUSCHEL and HECATE1 activities converge on shared transcriptional targetsMobile cytokinin response factors define a feedback system downstream of HECATE1Summary

Plants continuously maintain pluripotent stem cells embedded in specialized tissues called meristems, which drive long-term growth and organogenesis. Stem cell fate in the shoot apical meristem (SAM) is controlled by the homeodomain transcription factor WUSCHEL (WUS) expressed in the niche adjacent to the stem cells. Here, we demonstrate that the bHLH transcription factor HECATE1 (HEC1) is a target of WUS and that it contributes to SAM function by promoting stem cell proliferation, while antagonizing niche cell activity. HEC1 represses the stem cell regulators WUS and CLAVATA3 (CLV3) and, like WUS, controls genes with functions in metabolism and hormone signaling. Among the targets shared by HEC1 and WUS are phytohormone response regulators, which we show to act as mobile signals in a universal feedback system. Thus, our work sheds light on the mechanisms guiding meristem function and suggests that the underlying regulatory system is far more complex than previously anticipated.

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Scooped by Loïc Lepiniec
February 20, 2014 2:14 AM
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Timing Mechanism Dependent on Cell Division Is Invoked by Polycomb Eviction in Plant Stem Cells

Timing Mechanism Dependent on Cell Division Is Invoked by Polycomb Eviction in Plant Stem Cells | Plant and Seed Biology | Scoop.it
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Scooped by Loïc Lepiniec
February 19, 2014 8:03 AM
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Multigeneration analysis reveals the inheritance, specificity, and patterns of CRISPR/Cas-induced gene modifications in Arabidopsis

Multigeneration analysis reveals the inheritance, specificity, and patterns of CRISPR/Cas-induced gene modifications in Arabidopsis | Plant and Seed Biology | Scoop.it
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Rescooped by Loïc Lepiniec from Plant Biology Teaching Resources (Higher Education)
February 14, 2014 8:29 AM
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Cell - The TPLATE Adaptor Complex Drives Clathrin-Mediated Endocytosis in Plants

Cell - The TPLATE Adaptor Complex Drives Clathrin-Mediated Endocytosis in Plants | Plant and Seed Biology | Scoop.it

"Here, we identified an eight-core-component protein complex, the TPLATE complex, essential for plant growth via its role as major adaptor module for clathrin-mediated endocytosis. This complex consists of evolutionarily unique proteins that associate closely with core endocytic elements. "

 

Here's a nice press release from VIB about this work

http://www.vib.be/en/news/Pages/Plants-recycle-too.aspx


Via Mary Williams
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Scooped by Loïc Lepiniec
February 4, 2014 1:34 AM
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Transcriptional circuitry underlying seed coat development in Arabidopsis

Transcriptional circuitry underlying seed coat development in Arabidopsis | Plant and Seed Biology | Scoop.it
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Scooped by Loïc Lepiniec
January 30, 2014 4:22 PM
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DNA-binding specificities of plant transcription factors and their potential to define target genes

DNA-binding specificities of plant transcription factors and their potential to define target genes | Plant and Seed Biology | Scoop.it
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Scooped by Loïc Lepiniec
January 30, 2014 4:05 PM
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Timing Mechanism Dependent on Cell Division Is Invoked by Polycomb Eviction in Plant Stem Cells

Timing Mechanism Dependent on Cell Division Is Invoked by Polycomb Eviction in Plant Stem Cells | Plant and Seed Biology | Scoop.it
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