from Flow Cytometry to Cytomics
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from Flow Cytometry to Cytomics
from Flow Cytometry to Cytomics
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Scooped by Gilbert C FAURE
February 22, 2024 4:21 AM
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Blood-based liquid biopsy: A promising noninvasive test in diagnosis, surveillance, and prognosis of patients with upper tract urothelial carcinoma

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February 13, 2024 11:08 AM
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Training an automated circulating tumor cell classifier when the true classification is uncertain | PNAS Nexus | Oxford Academic

Training an automated circulating tumor cell classifier when the true classification is uncertain | PNAS Nexus | Oxford Academic | from Flow Cytometry to Cytomics | Scoop.it
Abstract. Circulating tumor cells (CTC) and tumor-derived Extracellular Vesicles (tdEV) loads are prognostic of survival in carcinoma patients. The current meth
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Scooped by Gilbert C FAURE
February 2, 2024 8:18 AM
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Liquid Biopsy For Cancer Diagnostics Market Size, Growth And Forecast 2024-2033

Liquid Biopsy For Cancer Diagnostics Market Size, Growth And Forecast 2024-2033 | from Flow Cytometry to Cytomics | Scoop.it
Global liquid biopsy for cancer diagnostics market size is expected to reach $16.42 Bn by 2028 at a rate of 15.7%, segmented as by type, product, services...
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Scooped by Gilbert C FAURE
January 15, 2024 9:03 AM
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Rapid evaluation of T cell clonality in the diagnostic work-up of mature T cell neoplasms: TRBC1-based flow cytometric assay experience

highlights

  • Unimodal TRBC1 pattern correlates with T cell clonality.

  • A TRBC1-including multiparametric panel improves clonality assessment sensitivity.

  • Monitoring TRBC1 helps in identifying small T-cell clones of uncertain significance.

  • TRBC1 represents an opportunity to overcome time-consuming diagnostic strategies.

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Scooped by Gilbert C FAURE
December 9, 2023 9:57 AM
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Paolo Cappella, Ph.D sur LinkedIn : #flowcytometry | 40 commentaires

Paolo Cappella, Ph.D sur LinkedIn : #flowcytometry | 40 commentaires | from Flow Cytometry to Cytomics | Scoop.it
Season's Greetings 🎄

As we celebrate this festive season, i am excited to share the spirit of innovation and discovery with our valued community. This is… | 40 commentaires sur LinkedIn
Gilbert C FAURE's insight:

Chat GPT a encore frappé

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Scooped by Gilbert C FAURE
November 14, 2023 5:46 AM
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Ultra-sensitive CTC-based liquid biopsy for pancreatic cancer enabled by large blood volume analysis | Molecular Cancer | Full Text

Ultra-sensitive CTC-based liquid biopsy for pancreatic cancer enabled by large blood volume analysis | Molecular Cancer | Full Text | from Flow Cytometry to Cytomics | Scoop.it
The limited sensitivity of circulating tumor cell (CTC) detection in pancreatic adenocarcinoma (PDAC) stems from their extremely low concentration in the whole circulating blood, necessitating enhanced detection methodologies. This study sought to amplify assay-sensitivity by employing diagnostic leukapheresis (DLA) to screen large blood volumes. Sixty patients were subjected to DLA, with a median processed blood volume of ~ 2.8 L and approximately 5% of the resulting DLA-product analyzed using CellSearch (CS). Notably, DLA significantly increased CS-CTC detection to 44% in M0-patients and 74% in M1-patients, yielding a 60-fold increase in CS-CTC enumeration. DLA also provided sufficient CS-CTCs for genomic profiling, thereby delivering additional genomic information compared to tissue biopsy samples. DLA CS-CTCs exhibited a pronounced negative prognostic impact on overall survival (OS), evidenced by a reduction in OS from 28.6 to 8.5 months (univariate: p = 0.002; multivariable: p = 0.043). Additionally, a marked enhancement in sensitivity was achieved (by around 3-4-times) compared to peripheral blood (PB) samples, with positive predictive values for OS being preserved at around 90%. Prognostic relevance of CS-CTCs in PDAC was further validated in PB-samples from 228 PDAC patients, consolidating the established association between CTC-presence and reduced OS (8.5 vs. 19.0 months, p < 0.001). In conclusion, DLA-derived CS-CTCs may serve as a viable tool for identifying high-risk PDAC-patients and aiding the optimization of multimodal treatment strategies. Moreover, DLA enables comprehensive diagnostic profiling by providing ample CTC material, reinforcing its utility as a reliable liquid-biopsy approach. This high-volume liquid-biopsy strategy presents a potential pathway for enhancing clinical management in this malignancy.
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Scooped by Gilbert C FAURE
October 3, 2023 8:28 AM
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ICCS 2023 | New Orleans, LA

ICCS 2023 | New Orleans, LA | from Flow Cytometry to Cytomics | Scoop.it
World Experts. Your Colleagues. Join Us. You are cordially invited to attend ICCS 2023, the 38th Annual International Clinical Cytometry Meeting & Course. Please join your clinical cytometry colleagues from September 29 - October 3, 2023.
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Scooped by Gilbert C FAURE
September 21, 2023 1:33 PM
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Cells | Special Issue : The Applications of Flow Cytometry: Advances, Challenges, and Trends

Cells | Special Issue : The Applications of Flow Cytometry: Advances, Challenges, and Trends | from Flow Cytometry to Cytomics | Scoop.it
Cells, an international, peer-reviewed Open Access journal.
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Scooped by Gilbert C FAURE
August 17, 2023 2:29 AM
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Alastair Davies on LinkedIn: 📢 What to know how cancer cells change their identity to evolve and…

Alastair Davies on LinkedIn: 📢 What to know how cancer cells change their identity to evolve and… | from Flow Cytometry to Cytomics | Scoop.it
📢 What to know how cancer cells change their identity to evolve and escape therapy? Check out our latest review in Cancer Discovery that presents unifying…
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Scooped by Gilbert C FAURE
July 2, 2023 3:57 AM
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Institute of Pharmaceutical Sciences of Western Switzerland (ISPSO)- University of Geneva على LinkedIn: Identification of the Proteins Determining the Blood Circulation Time of…

Institute of Pharmaceutical Sciences of Western Switzerland (ISPSO)- University of Geneva على LinkedIn: Identification of the Proteins Determining the Blood Circulation Time of… | from Flow Cytometry to Cytomics | Scoop.it
Check the newest paper from Cíntia Marques, Olivier Jordan, Gerrit Borchard (he/him) from Institute of Pharmaceutical Sciences of Western Switzerland (ISPSO)-…
Gilbert C FAURE's insight:

osteopontin, lipoprotein lipase, coagulation factor VII, matrix Gla protein, secreted phosphoprotein 24, alpha-2-HS-glycoprotein, and apolipoprotein C-I,

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Scooped by Gilbert C FAURE
June 25, 2023 2:26 PM
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UKE - Pressemitteilung - Tumorrestzellen: Standardisierte Flüssigbiopsien sollen Krebstherapie verbessern

Tumorrestzellen: Standardisierte Flüssigbiopsien sollen Krebstherapie verbessern
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Scooped by Gilbert C FAURE
June 16, 2023 8:23 AM
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North America Emerges as the Primary Market for Flow Cytometry with the Largest Share

North America Emerges as the Primary Market for Flow Cytometry with the Largest Share | from Flow Cytometry to Cytomics | Scoop.it
According to the new market research report "Flow Cytometry Market Size, Growth by Technology (Cell-based, Bead-based), Product & Service (Analyzer, Sorter, Consumables, Software), Application ((Research - Immunology, Stem cell), (Clinical - Hematology)), End user (Biotech, Hospitals) - Global Forec...
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Scooped by Gilbert C FAURE
April 19, 2023 2:46 AM
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Sorting cells with real-time imaging: a flow cytometry game changer

Sorting cells with real-time imaging: a flow cytometry game changer | from Flow Cytometry to Cytomics | Scoop.it
A conversation with Gert Van Isterdael, Head of VIB Flow Core at the VIB-UGent Center for Inflammation Research
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Scooped by Gilbert C FAURE
February 13, 2024 11:10 AM
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CBD’s Pobezinsky and Pobezinskaya Use Flow Cytometry to Determine How Tumor Cells Outwit the Body’s Immune System : Institute for Applied Life Sciences : UMass Amherst

CBD’s Pobezinsky and Pobezinskaya Use Flow Cytometry to Determine How Tumor Cells Outwit the Body’s Immune System : Institute for Applied Life Sciences : UMass Amherst | from Flow Cytometry to Cytomics | Scoop.it
The Center for Bioactive Delivery's Pobezinsky and Pobezinskaya have analyzed and described what they call the "mosquito effect," shedding light on how certain pathogens can outwit the body's immune system.
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Scooped by Gilbert C FAURE
February 6, 2024 3:53 AM
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John Gordon sur LinkedIn : Extracellular vesicles as tools and targets in therapy for diseases -…

John Gordon sur LinkedIn : Extracellular vesicles as tools and targets in therapy for diseases -… | from Flow Cytometry to Cytomics | Scoop.it
#ExtraCellularVesicles | Impressively Comprehensive OPEN ACCESS Review Covering Role for #EVs in #Cancer #NeuroDegenerativeDiseases #Diabetes…
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Scooped by Gilbert C FAURE
January 17, 2024 4:26 AM
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https://www.linkedin.com/posts/catherine-alix-panabi%C3%A8res-b5969942_cancer-liquidbiopsy-ctc-activity-7153076654972502016-mQVC?utm_source=share&utm_medium=member_desktop

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Scooped by Gilbert C FAURE
January 2, 2024 8:09 AM
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Frontiers | A comprehensive battery of flow cytometric immunoassays for the in vitro testing of chemical effects in human blood cells

Frontiers | A comprehensive battery of flow cytometric immunoassays for the in vitro testing of chemical effects in human blood cells | from Flow Cytometry to Cytomics | Scoop.it
BackgroundThere is a growing need for immunological assays to test toxic and modulatory effects of chemicals. The assays should be easy to use, reproducible and superior to cell line-based assays. We have therefore developed a comprehensive portfolio of assays based on primary human blood cells that are suitable for testing chemical effects.MethodsThe flow cytometry-based assays were designed to target a wide range of human peripheral blood mononuclear cells and whole blood, including T cells, NK cells, B cells, basophils and innate-like T cells such as γδT, MAIT and NKT cells. We have selected a set of activation markers for each immune cell, e.g: CD154 (T cells), CD137, CD107a (NK cells), CD63 (basophils), CD69, CD83 (B cells), CD69, IFN-γ (MAIT cells) and we selected cell specific stimuli: aCD3 antibodies (T cells); E. coli and cytokines IL-12/15/18 (MAIT cells); CpG ODN2006, R848 or aCD40 antibodies (B cells), fMLP or aFcϵR1 (basophils) or K562 cells (NK cells).ResultsBy selecting immune cell-specific markers and cell-specific stimuli, we were able to induce particular immune responses from the targeted immune cells. For example, the response to stimulation with anti-CD3 antibodies was in 36.8% of CD107a+CD8+ cells. Cytokine stimulation induced the production of IFN-γ in 30% of MAIT cells. After stimulation with E. coli, around 50% of MAIT cells produced TNF. About 40% of basophils responded to aFcƐR1 stimulation. Similar activation ranges were achieved i
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Scooped by Gilbert C FAURE
November 21, 2023 5:22 AM
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Leukemia and Lymphoma

Leukemia and Lymphoma | from Flow Cytometry to Cytomics | Scoop.it
Hematologic malignancies (blood cancers) are diseases of immune system cells and are traditionally categorized according to where the cancer is first detected.
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Scooped by Gilbert C FAURE
October 5, 2023 2:43 AM
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Computational Cytometry Summer School

Computational Cytometry Summer School | from Flow Cytometry to Cytomics | Scoop.it
The amount of data collected with cytometers keeps increasing. With studies measuring up to 40 markers, millions of cells per sample and up to thousands of samples, manual gating of all this data becomes infeasible. In this summer school, we will have workshops on all steps of a computational cytometry pipeline in R. On Monday morning, we offer two tracks, one for people with a cytometry background and one for people with a computational background. From Monday afternoon onwards, we will dive into the computational cytometry specifics. We will cover data cleaning, cell population identification and downstream statistics.  In addition, we will also have some sessions where these concepts are demonstrated on commercial platforms, such as FlowJo, FCSExpress and OMIQ. 
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Scooped by Gilbert C FAURE
September 24, 2023 4:00 AM
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Frontiers | Flow cytometric analysis of innate lymphoid cells: challenges and solutions

Frontiers | Flow cytometric analysis of innate lymphoid cells: challenges and solutions | from Flow Cytometry to Cytomics | Scoop.it
IntroductionThe three groups of helper innate lymphoid cells (ILCs), namely ILC1, ILC2 and ILC3, have been identified by flow cytometry by combinations of cell surface markers. Here, we review various ways ILCs are currently identified, focusing on potential problems and their solutions. The first step to identify all ILCs is to exclude other lymphocytes and myeloid cells by their lineage-specific markers (Lin). However, the Lin cocktail varies in various studies, and the definition of Lin- population containing ILCs is often ambiguous, resulting in contamination of Lin+ cells, particularly T cells.MethodWe have designed combinations of cell surface markers to identify ILC populations in various tissues of B6 mice by flow cytometry. To minimize T cell contamination, TCR/CD3ϵ antibodies were used separately from the Lin cocktail. ILCs identified by surface markers are confirmed by the expression of the transcription factors GATA3, RORγt, T-bet and Eomes.ResultILC1s in the B6 mouse liver are identified by Lin-NKp46+NK1.1+TCR/CD3ϵ−CD49a+CD49b−. However, defining ILC1s in other tissues remains a challenge. ILC2s in the lung are identified by Lin−TCR/CD3ϵ− Thy1+CD127+ST2+ whereas ILC2s in the small intestine and liver are identified by Lin−TCR/CD3ϵ−Thy1+GATA3+RORγt−. ILC3s in B6 mouse spleen, liver, lung and small intestine are identified by Lin−TCR/CD3ϵ− Thy1+CD127+RORγt+.DiscussionThe ILC population is heterogeneous and the strategies to identify ILCs have to be designed fo
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Scooped by Gilbert C FAURE
September 5, 2023 2:39 AM
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Web Tool

CRUSTY is a web-tool for clustering analysis designed for high-dimensional single-cell data.
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Scooped by Gilbert C FAURE
July 28, 2023 2:50 AM
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Catherine Alix-Panabières sur LinkedIn : Functional Analysis of Viable Circulating Tumor Cells from Triple-Negative…

Catherine Alix-Panabières sur LinkedIn : Functional Analysis of Viable Circulating Tumor Cells from Triple-Negative… | from Flow Cytometry to Cytomics | Scoop.it
🩸 Delighted to share this article on the characterization of viable CTCs with you ! Good reading !!!! 💫
#liquidbiopsy #circulatingtumorcells #CTCs #cancer…
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Scooped by Gilbert C FAURE
July 1, 2023 4:15 AM
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ISAC Learning: Home

ISAC Learning: Home | from Flow Cytometry to Cytomics | Scoop.it
Your cytometry learning portal.
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Scooped by Gilbert C FAURE
June 24, 2023 4:48 AM
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Flow Cytometry and Probiotic Enumeration Webinar

Flow Cytometry and Probiotic Enumeration Webinar | from Flow Cytometry to Cytomics | Scoop.it
Probiotic enumeration is a key testing component to ensure reliable and compliant products reach consumers. Eurofins offers a unique ISO 17025 accredited flow cytometry method for probiotic enumeration. Flow cytometry offers faster turn-around times and reduced relative standard deviation compared to traditional plating methods. However, limitations also exist for flow cytometry applications.
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Scooped by Gilbert C FAURE
May 13, 2023 4:57 AM
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Use of multi-color flow cytometry for canine immune cell characterization in cancer | PLOS ONE

Use of multi-color flow cytometry for canine immune cell characterization in cancer | PLOS ONE | from Flow Cytometry to Cytomics | Scoop.it
Although immunotherapy is becoming a standard approach of human cancer treatment, only a small but critical fraction of patients responds to the therapy. It is therefore required to determine the sub-populations of patients who will respond to immunotherapies along with developing novel strategies...
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