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Scooped by
ulcriv
July 23, 2025 3:05 PM
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In the Global North, alternative livestock farms are sometimes considered preferable to large-scale specialized farms, which are largely preeminent in current livestock supply chains. In this study, we aimed to determine if alternative livestock farms respected the socioeconomic principles of agroecology. A qualitative thematic analysis and a multivariate quantitative analysis were conducted based on data gathered from a sample of 15 farms over the course of three years. All farms raised multiple species and marketed their products through multiple different outlets, most of them directly to the end consumer, ensuring high economic diversification and connectivity. High levels of work satisfaction were commonplace, as farmers’ values were aligned with their work. Even though their sales prices were much higher than those obtained by large-scale specialized livestock farms, average net incomes and employee wages were low. Most farms operated at a small scale, but farms with higher gross incomes had higher net incomes, suggesting a certain level of economic performance due to economies of scale. Most farm characteristics were found to be in line with locally accepted social values such as gender equity, animal welfare, and providing ingredients for meat-forward diets, which are the local norm. Farmers deplored the fact that they did not have the institutional leverage to take part in territorial and food system governance. While alternative livestock farms cannot readily replace large scale specialized farms in terms of production volume, their socioeconomic characteristics were found to align with the agroecological ideal.
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ulcriv
July 23, 2025 2:13 PM
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With increasing demand for crops resilient to environmental variability, haskap (Lonicera caerulea) emerges as a promising berry for northern climates due to its rich bioactive content and distinct flavor. Nevertheless, its fragility presents major challenges for maintaining postharvest quality. This study evaluated the effect of storage conditions on haskap quality using two experimental approaches. The first experiment monitored quality attributes (color, firmness, total soluble solids, titratable acidity, weight loss, and antioxidant capacity) at temperatures (0°C, 4°C, and 8°C) over 28 days. Storage at 0°C most effectively preserved antioxidant capacity, with peak levels observed on Day 21 (1.04 ± 0.2 mM TE g−1 D.W), alongside maximal phenolic (37.38 ± 1.59 mg GAE g−1 D.W) and flavonoid (26.99 ± 0.99 mg rutin eq g−1 D.W) content. The second experiment, employing a factorial design, assessed the interactive effects of relative humidity (RH) (90% and 95%), temperature (0°C, 4°C, and 8°C), and time (1, 10, and 20 days) on haskap quality. Optimal conditions for quality preservation were identified as 0°C and 90% RH for 10 days of storage. These findings establish key storage requirements for haskap, informing postharvest practices aimed at maximizing shelf life and bioactive retention.
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ulcriv
July 23, 2025 12:04 PM
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Galanthamine, an isoquinoline alkaloid used to treat symptoms of Alzheimer's disease, is predominantly extracted from Amaryllidaceae plants, yet its supply remains limited. In this study, we identified, isolated, and characterized N-methyltransferases (NMTs) from three galanthamine-producing species: Leucojum aestivum, Lycoris radiata, and Hippeastrum papilio. The transcriptomic analysis identified five unique NMT isoforms, among which LaLrHpNMT1, an isoform highly conserved across all three species, exhibited the highest catalytic activity. Phylogenetic and structural analyses revealed that these enzymes share high sequence conservation and maintain the class I methyltransferase Rossmann fold with key catalytic residues, paralleling known NMTs from benzylisoquinoline alkaloid pathways. Flexible docking simulations confirmed that norgalanthamine, a crucial precursor, fits within the enzyme's active site and interacts with conserved residues Glu204 and His208. In vitro and in planta assays demonstrated that LaLrHpNMT1 efficiently catalyzes the N-methylation of norgalanthamine to galanthamine. Site-directed mutagenesis confirmed the key role of Glu204 and the participation of Phe residues in substrate stabilization. Additional enzyme assays revealed that LaLrHpNMT1 is promiscuous towards various alkaloid intermediates, while subcellular localization using eGFP-tagged constructs exposed a dual distribution in the cytosol and endoplasmic reticulum, suggesting that NMT activity occurs at the cytosol–ER interface where other biosynthetic enzymes reside. Environmental stress experiments in H. papilio shoots culture showed significant upregulation of NMT expression under heat and other stress conditions associated with AA levels modulation, indicating a potential link between stress responses and alkaloid biosynthesis. These findings deepen our understanding of galanthamine biosynthesis and provide a foundation for metabolic engineering strategies aimed at improving production yields.
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ulcriv
July 10, 2025 1:17 PM
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Protected crops like greenhouses and indoor farms using light-emitting diodes (LEDs) allow precise control of light spectrum, intensity, and photoperiod for agronomic purposes. These artificial light conditions also influence insects and arachnids, including predators used in biological control. Despite growing interest, the effects of LEDs on predator behavior and control efficacy remain poorly understood. In microcosm experiments, we studied the locomotion and predation behaviors of the generalist predator Orius insidiosus against thrips (Frankliniella occidentalis) under different light spectra and intensities. We tested narrowband blue, green, and red spectra, 3 blue-red ratios, and a spectrum combining all 3 colors across a light-intensity gradient. Predators attacked prey under all lighting conditions, with 70% of individuals showing predatory behavior during observations. Spectral composition significantly influenced behaviors of interest, while light intensity had negligible effects. Narrowband spectra elicited the highest attack probabilities, but the mixed blue-red spectrum with a higher proportion of red light yielded the highest prey capture rates. The spectrum combining all 3 colors showed intermediate prey capture success. In complex environments with cucumber plants and 24-h artificial light sequences, prey capture probabilities followed similar trends to microcosm experiments. However, thrips survival rates remained similar across all lighting treatments. Our findings suggest that while lighting influences O. insidiosus behavior, this predator remains effective under various conditions, providing a foundation for lighting strategies that balance plant productivity with biological control.
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ulcriv
July 10, 2025 12:40 PM
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In February 2023, potato (Solanum tuberosum L.) plants (cv. Fianna) exhibiting symptoms of aerial stem rot (water-soaked and brown lesions on the stem) were observed in a field in the Guasave Valley, northern Sinaloa, Mexico with an incidence of approximately 40%. Ten symptomatic stem fragments from five diseased plants were disinfected, plated on crystal violet pectate (CVP) medium, and incubated at 28°C for 24 h (Hélias, 2012). Single colonies that formed cavities were selected for further analysis. Five representative isolates, showing biochemical and morphological characteristics consistent with Pectobacterium spp. (Palafox et al., 2024), were chosen. These characteristics included catalase activity, pectinolytic activity, Gram-negative bacilli morphology, absence of oxidase activity, and non-fluorescence on King’s B medium.
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ulcriv
July 10, 2025 12:19 PM
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The production of coronavirus disease 2019 vaccines can be achieved by transient expression of the spike (S) protein of severe acute respiratory syndrome coronavirus 2 in agroinfiltrated leaves of Nicotiana benthamiana. Relying on bacterial vector Agrobacterium tumefaciens, this process is favoured by co-expression of viral silencing suppressor P19. Upon expression, the S protein enters the cell secretory pathway, before being trafficked to the plasma membrane where formation of coronavirus-like particles (CoVLPs) occurs. We previously characterized the effects of influenza virus hemagglutinin forming VLPs through similar processes. However, leaf samples were only collected after 6 days of expression, and it is unknown whether influenza VLPs (HA-VLPs) and CoVLPs induce similar responses. Here, time course sampling was used to profile responses of N. benthamiana leaf cells expressing P19 only, or P19 and the S protein. The latter triggered early but transient activation of the unfolded protein response and waves of transcription factor genes involved in immunity. Accordingly, defence genes were induced with different expression kinetics, including those promoting lignification, terpene biosynthesis, and oxidative stress. Cross-talk between stress hormone pathways also occurred, including repression of jasmonic acid biosynthesis genes after agroinfiltration, and dampening of salicylic acid responses upon S protein accumulation. Overall, HA-VLP- and CoVLP-induced responses broadly overlapped, suggesting nanoparticle production to have the most effects on plant immunity, regardless of the virus surface proteins expressed. Taking advantage of RNAseq inferences, we finally show the co-expression of Kunitz trypsin inhibitors to reduce CoVLP-induced defence and leaf symptoms, with no adverse effect on plant productivity.
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ulcriv
July 3, 2025 4:41 PM
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The study investigated the effect of 17 synthetic fungicides used in strawberry fields in Québec (Canada) on the in vitro growth of Hirsutella sp., an entomopathogenic fungus. Isolates collected from cyclamen mites from farms with a conventional growing system (Hirsutella sp. H94 and Hirsutella nodulosa H98) and from a farm with an organic growing system (H. nodulosa H0) were selected for the study. All the fungicides tested strongly inhibited the mycelial growth of the three isolates, although slight differences in sensitivity were observed. Fullback® 125 SC (A.I.: flutriafol), Mettle® 125 ME (A.I.: tetraconazole), NovaTM (A.I.: myclobutanil), and Quadris top® (A.I.: azoxystrobin and difenoconazole) were the most effective at inhibiting the growth of the three isolates. Property® 300SC (A.I.: pyriofenone) was the fungicide with the lowest inhibiting effect on the growth of the three isolates. Isolates H94 and H98 obtained from farms with a conventional growing system, and thus frequently exposed to synthetic fungicides, did not show resistance to the fungicides tested. The study suggests that fungicides might negatively impact the natural populations of the entomopathogenic fungi of the genus Hirsutella on strawberry plants.
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ulcriv
July 2, 2025 5:44 PM
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Angular leaf spot (ALS) caused by Pseudomonas syringae is an important seedborne bacterial disease in cucurbits. Currently, growers have very few alternatives to copper-based pesticides for the control of the disease in both conventional and organic growing systems. Recent work performed by our group revealed that sugar maple and silver maple leaf extracts show potential as alternatives to the use of copper-based pesticides for the control of plant-pathogenic bacteria. This study investigated the antibacterial and prophylactic activity of ethanolic sugar maple/silver maple autumn-shed leaf extracts against P. syringae. Silver maple and sugar maple leaf extracts showed antibacterial activity under in vitro conditions against P. syringae with minimum inhibitory concentration (MIC) values of 0.39 and 0.78 mg/mL, respectively. The extracts were also very effective as seed treatments at concentrations of 50 or 100 mg/mL. Foliar applications of sugar maple leaf extracts at concentrations of 14.1 mg/mL (corresponding to phytotoxic dose 5% [PD5] value) and 28.2 mg/mL (corresponding to 2 × PD5 value) were either as effective (PD5) or more effective (2 × PD5) than copper octanoate to control ALS on cucumber plants. Silver maple leaf extracts used at a concentration corresponding to PD5 value were as effective as copper octanoate to control ALS on cucumber. Foliar applications of the extracts also showed efficacy in reducing the severity of ALS on butternut squash plants. This study opens new avenues for the management of ALS in cucurbits using silver maple and sugar maple leaf extracts as alternatives to the use of copper-based pesticides.
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Scooped by
ulcriv
July 2, 2025 5:19 PM
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Phaeodactylum tricornutum is a promising host for light-driven synthesis of heterologous proteins. However, the marine cold-water environment and alkaline-acidic pH shifts in the culture, necessitated by the diatom’s growth requirements. In this study, we analyzed the influence of growth condition on maturation and dynamics of the yellow fluorescent protein (YFP) in episomal-transformant P. tricornutum. A mathematical model was developed to detect the parameters that affect biomass and YFP production. Optimized conditions increased YFP mean fluorescence intensity (MFI) per cell by 4.2-fold (3.6 ± 0.6 to 15.4 ± 1.1) and total protein levels in the culture by 1.8-fold (123 ± 4 to 219 ± 9 µg L−1), without affecting biomass. YFP stability studies in P. tricornutum showed that the ubiquitin–proteasome system contributes the degradation of the recombinant protein, whereas newly synthesized YFP remains stable for up to 12 h. This optimization provides insights into the fluorescent protein-based heterologous production in diatoms.
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ulcriv
July 2, 2025 5:00 PM
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The widespread use of pesticides on golf courses, essential for maintaining healthy turfgrass, has raised significant environmental and health concerns as perceived by many well-intentioned members of society. In response to regulatory pressures, this study aimed to evaluate reduced-risk approaches to managing two prevalent turf diseases, dollar spot (Clarireedia spp.) and snow molds (Typhula sp. and Microdochium nivale (Fr.) Samuels & I.C. Hallett), at two experimental sites in Quebec, Canada. A variety of treatments, including synthetic fungicides, reduced-risk fungicides, biofungicides, and fertilizers, were assessed in 2021 and 2022. For dollar spot, the reduced-risk fungicide isofetamid achieved similar disease control comparable to the synthetic standard (chlorothalonil/propiconazole); however, biofungicides and fertilizers did not provide significant disease reduction. For snow mold, a reducedrisk treatment (fluoxastrobin + mefentrifluconazole) was effective but less so than the synthetic standard. Overall, reduced-risk fungicides demonstrated potential for controlling these diseases while significantly reducing human health and environmental risks, although efficacy varied among those fungicides. This study supports the viability of integrating reduced-risk or lower-toxicity pesticides into golf course pest management strategies and programs, contributing to more sustainable turfgrass management practices.
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ulcriv
July 2, 2025 4:42 PM
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Plants interact with microorganisms that can cause diseases and reduce crop productivity. The fungal pathogen Melampsora larici-populina (Mlp) causes the leaf rust disease of poplar trees by secreting proteins, termed effectors, into host tissues to promote pathogenesis. In this study, we functionally characterized two homologous Mlp candidate secreted effector proteins (CSEPs), Mlp72983 and Mlp52166. Confocal microscopy experiments revealed that Mlp72983 has cell type-specific differential localization. It accumulates in the guard cells’ chloroplast of the epidermis and in the nucleus of the spongy mesophyll of Arabidopsis thaliana and Populus alba x Populus tremula. Mlp52166 has a nucleocytosolic accumulation in the epidermal layer and has nuclear localization in the mesophyll layer of the two species. Transcriptomic experiments showed that Mlp72983 and Mlp52166 deregulate plant genes, when constitutively expressed in either Arabidopsis or poplar. The two CSEPs deregulate genes that encode histones, hydroxysteroid dehydrogenases, and multidrug and toxic compound extrusion proteins, with roles in DNA repair, methylation, and xenobiotic detoxification. Inoculation assays showed that CSEPs overexpression in poplar transgenics did not enhance susceptibility to rust infection. Despite being closely related in sequence identity, Mlp72983 and Mlp52166 have cell type-specific subcellular localization and deregulate mostly unique sets of plant genes.
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ulcriv
June 30, 2025 5:36 PM
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Although the 16S (and 18S) rRNA gene has been an essential tool in classifying prokaryotes, using a single locus to revise bacteria taxonomy can introduce unwanted artifacts. There was a recent proposition to split the Methylobacterium genus, which contains diverse plant-associated strains and is important for agriculture and biotechnology, into two genera. Resting strongly on the phylogeny of 16S rRNA, 11 species of Methylobacterium were transferred to a newly proposed genus Methylorubrum. Numerous recent studies have independently questioned Methylorubrum as a valid genus, but the prior revision has left discrepancies among taxonomic databases. Here, we review phylogenomic and phenotypic evidence against Methylorubrum as a genus and call for its abandonment. Because Methylobacterium sensu lato forms a consistent and monophyletic genus, we argue for the restoration of the former and consensual Methylobacterium taxonomy. The large genomic, phenotypic, and ecological diversity within Methylobacterium however suggests complex evolutionary and adaptive processes and support the description of the most basal clade of Methylobacterium (group C) as a distinct genus in future work. Overall, this perspective demonstrates the danger of solely relying upon the 16S rRNA gene as a delimiter of genus level taxonomy and that further attempts must include more robust phenotypic and phylogenomic criteria.
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ulcriv
June 30, 2025 5:21 PM
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Cannabis sativa's cannabidiolic acid (CBDA) offers significant therapeutic potential without inducing psychotropic effects but is typically found as part of a complex mixture of metabolites in plant extracts. Using a heterologous expression platform could allow the production of pure CBDA. Here, we propose to express CBDA synthase (CBDAS) in Phaeodactylum tricornutum. Episomes carrying CBDAS variants, incorporating the native signal peptide (CBDAS) or the highly abundant secreted protein 1 secretory signal peptide (SP:CBDAS) were constructed. CBDAS variants were tagged with the yellow fluorescent protein (YFP), introduced into the marine diatom, and screened by fluorescence. Confocal microscopy revealed that CBDAS and SP:CBDAS arranged in aggregated structures indicative of secretory pathway involvement. Western blot assays confirmed whole construct accumulation intracellularly, while soluble YFP was detected extracellularly. Finally, enzymatic assays showed CBDA production by both CBDAS and SP:CBDAS strains, confirming the potential of P. tricornutum as a platform for cannabinoid biosynthesis.
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ulcriv
July 23, 2025 2:40 PM
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Cannabis (Cannabis sativa L.), once sidelined by decades of prohibition, has now gained recognition as a multifaceted and promising plant in both medical research and commercial applications following its recent legalization. This study leverages a genome-wide association study (GWAS) on 174 drug-type Cannabis accessions from the legal Canadian market, focusing on identifying quantitative trait loci (QTL) and candidate genes associated with eleven cannabinoid traits using 282K common single-nucleotide polymorphisms. This approach aims to transform our understanding of Cannabis genetics. We have pinpointed 33 significant markers that significantly influence cannabinoid production, promising to drive the development of Cannabis varieties with specific cannabinoid profiles. Among the notable findings is a massive haplotype of ∼60 Mb on chromosome 7 in Type I (i.e., tetrahydrocannabinol [THC]-dominant) accessions, highlighting a major genetic influence on cannabinoid profiles. These insights offer valuable guidance for Cannabis breeding programs, enabling the use of precise genetic markers to select and refine promising Cannabis varieties. This approach promises to speed up the breeding process, reduce costs significantly compared to traditional methods, and ensure that the resulting Cannabis varieties are optimized for specific medical and recreational needs. This study marks a significant stride toward fully integrating Cannabis into modern agricultural practices and genetic research, paving the way for future innovations.
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ulcriv
July 23, 2025 12:20 PM
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Background and aims Benefits for soil health associated with crop rotations can improve plant aboveground biomass, although the effect on root traits is unclear. The aim of this study was to measure the legacy effect of crop rotations typical of dairy farms on root traits of subsequent forage corn (Zea mays L.) and soybean (Glycine max [L.] Merr.). Methods On a silty clay in eastern Canada, six rotations were compared, varying in crop species (perennials and/or annuals) and fertilizer sources (dairy cattle slurry and/or mineral fertilizer) for 5 years. Roots of subsequent corn and soybean were sampled by coring (0–45 cm), washed, and digitized for image analysis. Results Crop rotations including perennial crops rather than only annual crops resulted in greater total net annual productivity in corn (+ 20%) and soybean (+ 21%), corn root biomass (+ 31%) and length density (+ 106%), and proportion of fine roots. Compared to the alfalfa-grass mixture, grass-only mixtures resulted in a greater corn root biomass (+ 23%) and length density (+ 54%). A longer duration (5 vs. 3 years) of the alfalfa-grass mixture improved corn root length density (+ 37%) and corn and soybean fine root proportion at depth, suggesting benefits from maintaining perennial forage stands over time. Mineral fertilizer versus slurry improved root traits of subsequent corn and soybean when applied to perennial but not annual crops. Conclusion Our results highlight the positive response of corn and soybean root traits to the presence, species composition, and duration of perennial forage crops, extending further their benefits within rotations.
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ulcriv
July 23, 2025 12:01 PM
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Field experiments were conducted to determine the establishment and the effectiveness of certain predatory mites in controlling spider mites in raspberry grown under high tunnels. First, the efficacy of Neoseiulus fallacis and N. californicus releases combined with Phytoseiulus persimilis was compared to an acaricide (clofentezine). Weather and low release rates being unfavourable to predator establishment, release strategies were not as effective as the acaricide. Second, the effect of adding an artificial mist on the establishment of P. persimilis was measured. Control was achieved more rapidly by treatment with artificial mist, but the difference in prey and predator density was not significant. Third, a population dynamics model was developed and calibrated with the aim of better understanding spider mite dynamics under tunnel production. The model fits the field data well, is useful for sizing up the impact of different parameters on the population dynamic and shows that temperature is a critical parameter in the management of spider mites.
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ulcriv
July 10, 2025 1:13 PM
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Phenolic compounds have been proposed to influence decomposition by inhibiting extracellular enzyme activities, as described in the enzymic latch mechanism (ELM). This study examined the effects of phenolic treatments on Sphagnum decomposition, productivity, and biomass accumulation within a Sphagnum farming system. A split-plot experiment with three phenolic treatments was implemented in two cultivation basins established with mosses dominated by the Acutifolia or Sphagnum subgenus. Phenolic treatments were wood pellets (wood), old roots from peat harrowing (root), and no addition (control). Phenolic additions did not result in a measurable reduction in decomposition rates nor was Sphagnum productivity or biomass affected by the experimental treatments. Both subgenera functioned as approximately similar small carbon dioxide (CO2) sinks, with values such as −2 ± 1 g CO2 m−2 d−1 (Acutifolia) and −0.2 ± 0.8 g CO2 m−2 d−1 (Sphagnum). Phenolic additions in both subgenera resulted in higher CO2 values as net ecosystem exchange compared to the control, which could be linked to emissions resulting from wood and root decomposition. In both subgenera, phenolic additions neither increased peat phenolic concentrations nor inhibited enzyme activities compared to the control. The current study did not validate the potential of phenolics in limiting decomposition as theorized in the ELM. The short duration of the experiment may have restricted the effect of phenolic products applied at the surface from reaching the ∼10 cm depth where peat was sampled. This could explain the absence of an inhibitory effect of phenolic products on enzyme activities. Therefore, it is recommended to conduct various sample analyses at different depths to better understand phenolic–enzyme interactions in a Sphagnum farming system.
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ulcriv
July 10, 2025 12:31 PM
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Background Pharmaceutical safety is an increasing global priority, particularly as the demand for therapeutic compounds rises alongside population growth. Phytocannabinoids, a class of bioactive polyketide molecules derived from plants, have garnered significant attention due to their interaction with the human endocannabinoid system, offering potential benefits for managing a range of symptoms and conditions. Traditional extraction from cannabis plants poses regulatory, environmental, and yield-related challenges. Consequently, microbial biosynthesis has emerged as a promising biotechnological alternative to produce cannabinoids in a controlled, scalable, and sustainable manner. Developing diatom-based biofactories represent a crucial step in advancing this biotechnology, enabling the efficient production of high-valued compounds such as cannabinoids. Results We engineered the diatom Phaeodactylum tricornutum, a unicellular photosynthetic model organism prized for its naturally high lipid content, to produce olivetolic acid (OA), a key metabolic precursor to most cannabinoids. The genes encoding tetraketide synthase and olivetolic acid cyclase from cannabis were cloned onto episomal vectors and introduced using bacterial conjugation in two separate P. tricornutum transconjugant lines to evaluate enzyme activity and OA production in vivo. Both genes were successfully expressed, and the corresponding enzymes accumulated within the transconjugant lines. However, despite testing the cell extracts individually and in combination, OA accumulation was not detected suggesting potential conversion or utilization of OA by endogenous metabolic pathways within the diatoms. To investigate this further, we analyzed the impact of CsTKS expression on the diatom’s metabolome, revealing significant alterations that may indicate metabolic flux redirection or novel pathway interactions. Conclusions Our study demonstrates the successful expression of cannabinoid biosynthetic genes in P. tricornutum but highlights challenges in OA accumulation, likely due to endogenous metabolic interactions. These findings underscore the complexity of metabolic engineering in diatoms and suggest the need for further pathway optimization and metabolic flux analysis to achieve efficient cannabinoid biosynthesis. This research contributes to advancing sustainable biotechnological approaches for cannabinoid production. Graphical abstract
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ulcriv
July 3, 2025 5:16 PM
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The different steps of alternative splicing (AS) in plants and its regulatory mechanisms have already been studied extensively. Its broader impact on cell identity, plant immunity-related genes, and their study as a whole remains to be investigated. Using transgenic plants, we sorted 11 different Arabidopsis thaliana cell types ranging from root to aerial organs using fluorescence-activated cell sorting. RNA-seq data were analyzed with vast-tools and enabled us to generate a high-resolution AS landscape across multiple cell types, all collected through the same experimental procedure. The analysis of cell type-specific gene expression and alternative splicing events highlights the importance of AS on transcription and AS regulation itself. AS is also shown to be tightly linked to cell identity. By using closely related cell types, we captured alternative splicing events involved in specific stages of plant development. The columella cells, among others, show intensified AS regulation and an interesting splicing profile, especially regarding immunity-related genes. Overall, our analysis brings a valuable tool in the study of cell type identity, plant immunity, and AS.
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ulcriv
July 3, 2025 4:35 PM
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Advancements in sequencing technologies have dramatically transformed genomics research by enabling the analysis of genetic information with unprecedented scale and efficiency. Next-generation sequencing, renowned for its high-throughput capabilities, has significantly reduced costs and expanded the scope of sequencing applications. Among these, sequencing by synthesis on Illumina systems is predominant, favored for its accuracy and cost-effectiveness. However, emerging technologies like Element Biosciences’ sequencing by Avidity (AVITI) are beginning to challenge this dominance. In this study, we sequenced and genotyped a library of 40 Cannabis samples using both the AVITI and Illumina NovaSeq systems. After filtering out low-quality variants, both technologies showed an 81.2% overlap with 98.9% concordance in genotype calls. AVITI stands out for its flexibility and reduced per-base costs, presenting a viable option particularly for mid-sized laboratories. As the scientific community continues to seek ways to lower genotyping expenses, the combination of the AVITI system with NanoGBS library preparation offers a cost-effective solution adaptable to a wide range of project sizes.
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ulcriv
July 2, 2025 5:22 PM
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Amaryllidaceae alkaloids (AAs) are diverse bioactive metabolites with significant pharmaceutical potential, derived from 4′-O-methylnorbelladine (4′OM). The biosynthesis of these compounds involves the condensation of tyramine and 3,4-dihydroxybenzaldehyde by norbelladine synthase (NBS) and/or noroxomaritidine/norcraugsodine reductase (NR), followed by O-methylation. Cytochrome P450 enzymes, particularly the CYP96T family, introduce further structural diversity through C–C couplings, resulting in lycorine, galanthamine and crinine cores. Despite their importance, the exact biosynthetic pathways remain poorly defined. In this study, we describe key enzymes from Leucojum aestivum (La), providing crucial insight into AA biosynthesis. Transient expression in Nicotiana benthamiana demonstrated that LaNBS and LaNRII catalyse the conversion of tyramine and 3,4-dihydroxybenzaldehyde to norbelladine, which is subsequently O-methylated by a norbelladine-4′-O-methyltransferase (LaN4′OMT) in planta. Co-agroinfiltration of LaNBS, LaNRII, LaN4′OMT and LaCYP96T1 resulted in the production of various phenol-coupled products, with lycorine as the predominant compound, alongside haemanthamine, crinine/vittatine and norgalanthamine. This study identifies LaCYP96T1 and LaCYP96T2 as the first monocot enzymes capable of catalysing all three regioselective C-C phenol couplings and also highlights the substrate promiscuity of LaNRII. The findings not only elucidate critical steps in AA biosynthesis but also open new avenues for biotechnological application in producing valuable alkaloids, offering potential for novel drug development.
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ulcriv
July 2, 2025 5:06 PM
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The emergence and re-emergence of pathosystems are expected to increase with ongoing climate change. Strawberry green petal disease (SbGP) is caused by phytoplasmas transmitted by two leafhopper species, Aphrodes bicinctus and Macrosteles quadrilineatus, in strawberry crops. In Québec, SbGP was frequently reported between 1950 and 1970. However, recent surveys (2012–2022) indicate an increased disease incidence in strawberry fields. While it is unclear whether this increase indicates a re-emergence or underreporting, understanding these pathosystem components can help clarify the underlying causes. This case study reviews the SbGP pathosystem, historical reports, and existing control measures, emphasizing the importance of ongoing and future research to address identified gaps. Although SbGP currently poses a limited economic threat, the interactions within the pathosystem could be exacerbated by warming temperatures, potentially leading to increased vector populations, altered phytoplasma development, susceptibility of strawberry plants, and consequently, severe outbreaks and a broader geographic distribution of the disease.
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ulcriv
July 2, 2025 4:54 PM
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Due to its persistence, glyphosate contamination in soil poses environmental and health risks. Plant growth-promoting bacteria (PGPB) offer a potential solution for mitigating glyphosate pollution. This study assessed the glyphosate degradation capacity of three airborne PGPB isolates (Exiguobacterium indicum AS03, Kocuria sediminis AS04, and Rhodococcus rhodochrous AS33) individually and in a consortium (CS) compared to natural attenuation in microcosms as the control (CTL), where soil autochthonous microorganisms (MS) were present. AS03 exhibited the highest glyphosate degradation (86.3%), followed by AS04 and AS33 at 14 days (61.6% and 64.7%). The consortium accelerated glyphosate removal, reaching 99.7%, while the control treatment removal was 94% at 60 days. Aminomethylphosphonic acid (AMPA) is the main metabolite in glyphosate degradation, and it had a maximum peak in concentration at 28 days in the CS + MS (1072 mg kg−1) and CTL (990 mg kg−1) treatments. Subsequently, a decrease in AMPA concentration was observed at 60 days up to 349 mg kg−1 and 390 mg kg−1, respectively. These results suggested that soil autochthonous microorganisms and their interactions with a consortium have similar biotransformation of glyphosate, but the AMPA conversion to other intermedium metabolites through degradation was slow. A minimum AMPA concentration of 15–45 mg kg−1 over time was detected with the consortium. The microbiome analysis revealed shifts in microbial composition, with an increase in glyphosate-degrading genera like Psychrobacter and Lyzobacter. These changes enhance soil resilience and fertility, demonstrating the potential of airborne PGPB for bioremediation and environmental sustainability.
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Scooped by
ulcriv
June 30, 2025 5:54 PM
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Crop rotations on dairy farms in eastern Canada nowadays include fewer perennial crops and more nitrogen-demanding annual crops. This study compared, over a 7- year rotation cycle, the agronomic performance and the legacy effect of six crop rotations that varied in crop types (perennial or annual) and nutrient sources (mineral or organic). Crop yield and nutritive value were determined on a yearly basis and cumulated over the rotation cycle. The legacy effect was assessed by growing forage corn (Zea mays L.) in year 6 and soybean [Glycine max (L.) Merr.] in year 7 in all rotations. The legacy effect of perennial forage crops manifested with a 78% lower weed biomass at harvest of forage corn in year 6 and a 14% greater soybean yield in year 7. A greater soil-derived corn nitrogen uptake in year 6 after repeated slurry applications indicated a modest legacy effect of organic fertilization on soil N supply capacity. The presence of perennial forage crops or the use of organic fertilization did not affect cumulative dry matter or crude protein production over the 7-year rotation cycle. The addition of alfalfa (Medicago sativa L.) in mixture with perennial grasses improved forage yield (+26%) and nutritive value (greater digestible energy and crude protein concentration) in post-seeding years. In perennial-based rotations, adding alfalfa to grasses resulted in greater dry matter (+22%) and crude protein (+46%) productions over the 7-year cycle despite a fourfold reduction in N fertilizer input, attesting to the high N use efficiency of perennial legume-based cropping systems.
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ulcriv
June 30, 2025 5:29 PM
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The peatland restoration method, the Moss Layer Transfer Technique (MLTT), has been successfully developed and implemented to restore Sphagnum-dominated peatlands in North America. The efficiency of an adapted version of the MLTT using fen plants for minerotrophic (fen) peatland restoration has shown mixed results, especially regarding the recovery of bryophytes. Additionally, due to differences in peat extraction histories, disturbances, restoration techniques, and desired ecological outcomes, European approaches cannot be directly applied to North American peatlands. It has been suggested that active rewetting alone could ensure fen plant regeneration post-restoration. As there is a growing interest in the minerotrophic peatland restoration, fen restoration methods after peat extraction needs to be refined, and the management process stands in need of new approaches. This study presents the first case of an ecosystem-scale fen restoration project in Canada at an industrial peat extraction site. It was restored in the province of Quebec in 2009, testing three different restoration approaches, including active rewetting only – REW, active rewetting, and peat profiling with vegetation removal – REW + PRO, and a combination of active rewetting, peat profiling with vegetation removal, plus mechanical reintroduction of fen plant material (MLTT) – REW + PRO + PLANT. This study aims to compare the pre- and post-restoration (13 years) plant communities using a BACI design (Before and After Control Impact). It focuses on the recovery of bryophyte carpets and evaluates the return of fen species as well as peatland generalists, marsh-swamps, and upland species. At the whole site level, the rewetting action had a prominent impact and major success in terms of an increase in the richness and frequency of peatland vascular plant species, but the recruitment of peatland bryophytes and particularly brown mosses was relatively much less successful. Active rewetting proved relatively practicable compared to the other two restoration methods, but to enhance its efficiency, it should not result in flooding, which could subsequently lead to helophytisation. The different vegetation outcomes of the restoration were influenced by governing factors such as processes associated with restoration methods (e.g., rewetting, pre-existing vegetation removal, and donor material reintroduction) and site-specific physio-chemical and environmental conditions. Our 13 years post-restoration surveys highlight that there are still large knowledge gaps and that increased, robust research into fen restoration is needed.
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