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Save the date! - I2BC PhD students' symposium - 16-17th June

Save the date! - I2BC PhD students' symposium - 16-17th June | I2BC Paris-Saclay | Scoop.it

 Today, we announce an exciting event organized on the CNRS campus of Gif-sur-Yvette, by the young scientists of I2BC and for I2BC doctoral students: the I2BC doctoral students' symposium.

Save the date : 16 & 17th June.

Essentially build around the scientific work of I2BC doctoral students, speakers will also be invited to these two days of seminars and posters. Participating in doctoral students' symposium gives you the opportunity to have an overview of the new projects of I2BC groups.

sofia carlos's curator insight, April 10, 8:46 PM
fedinan levi's curator insight, Today, 7:24 AM

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A Continuous Assay Set to Screen and Characterize Novel Protein N-Acetyltransferases Unveils Rice General Control Non-repressible 5-Related N-Acetyltransferase2 Activity

A Continuous Assay Set to Screen and Characterize Novel Protein N-Acetyltransferases Unveils Rice General Control Non-repressible 5-Related N-Acetyltransferase2 Activity | I2BC Paris-Saclay | Scoop.it

A new, robust continuous high-trough put test to screen and characterize new acetyltransferases.

Protein N-acetyltransferases (NATs) belong to the general control non-repressible 5 (Gcn5)-related N-acetyltransferases (GNATs) superfamily. GNATs catalyze the transfer of acetyl from acetyl-CoA to the reactive amine moiety of a wide range of acceptors. NAT sequences are difficult to distinguish from other members of the GNAT superfamily and there are many uncharacterized GNATs. To facilitate the discovery and characterization of new GNATs, we have developed a new continuous, non-radioactive assay. This assay is virtually independent of the substrate and can be used to get substrate specificity hints. We validated first the assay with the well-characterized Schizosaccharomyces pombe NatA (SpNatA). The SpNatA kinetic parameters were determined with various peptides confirming the robustness of the new assay. We reveal that the longer the peptide substrate the more efficient the enzyme. As a proof of concept of the relevance of the new assay, we characterized a NAA90 member from rice (Oryza sativa), OsGNAT2. We took advantage of an in vivo medium-scale characterization of OsGNAT2 specificity to identify and then validate in vitro several specific peptide substrates. With this assay, we reveal long-range synergic effects of basic residues on OsGNAT2 activity. Overall, this new, high-throughput assay allows better understanding of the substrate specificity and activity of any GNAT.

More information: https://pubmed.ncbi.nlm.nih.gov/35273627/

Contact: Carmela Giglione <carmela.giglione@i2bc.paris-saclay.fr>

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Starting the engine of the powerhouse: mitochondrial transcription and beyond

Starting the engine of the powerhouse: mitochondrial transcription and beyond | I2BC Paris-Saclay | Scoop.it

Mitochondria are the powerhouses of cells thanks to the oxidative phosphorylation system partially encoded by a small mitochondrial genome (mtDNA). Miranda et al review our current knowledge on mtDNA expression, associated disease phenotypes, and how mtDNA and nuclear gene expression are coordinated.

Mitochondria are central hubs for cellular metabolism, coordinating a variety of metabolic reactions crucial for human health. Mitochondria provide most of the cellular energy via their oxidative phosphorylation (OXPHOS) system, which requires the coordinated expression of genes encoded by both the nuclear (nDNA) and mitochondrial genomes (mtDNA). Transcription of mtDNA is not only essential for the biogenesis of the OXPHOS system, but also generates RNA primers necessary to initiate mtDNA replication. Like the prokaryotic system, mitochondria have no membrane-based compartmentalization to separate the different steps of mtDNA maintenance and expression and depend entirely on nDNA-encoded factors imported into the organelle. Our understanding of mitochondrial transcription in mammalian cells has largely progressed, but the mechanisms regulating mtDNA gene expression are still poorly understood despite their profound importance for human disease. Here, we review mechanisms of mitochondrial gene expression with a focus on the recent findings in the field of mammalian mtDNA transcription and disease phenotypes caused by defects in proteins involved in this process.

More information: https://www.degruyter.com/document/doi/10.1515/hsz-2021-0416/html

Contact: Inge Kuhl  <inge.kuhl@i2bc.paris-saclay.fr>

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Oxydative stress is a major trigger of the biosynthesis of some antibiotics in Streptomyces.

Oxydative stress is a major trigger of the biosynthesis of some antibiotics in Streptomyces. | I2BC Paris-Saclay | Scoop.it

A proteomic study indicated that the ability of the pptA/sco4144 mutant strain of S. lividans to produce antibiotics is linked to a deficit in the generation of NADP(H) leading to high oxidative stress, a powerful trigger of a specific class of antibiotics.

Streptomyces coelicolor and Streptomyces lividans, are closely related strains possessing the same biosynthetic clusters directing the biosynthesis of various specialized bio-active metabolites including that of the blue polyketide, actinorhoddin (ACT), that bears anti-oxidant properties. However most of these pathways are expressed in S. coelicolor but not in S. lividans. Interestingly, the disruption of a single gene (pptA) of S. lividans conferred to this strain the ability to produce ACT. A comparative quantitative proteomic analysis of these strains was carried out in order to define the potentially common features of the ACT producing strains. The abundance of proteins of numerous pathways differed greatly between S. coelicolor and the S. lividans strains, especially those of central carbon metabolism and respiration. S. coelicolor is characterized by a weak glycolytic activity resulting into a low carbon flux through the Pentose Phosphate Pathway, involved in the generation of NADPH, a co-factor of thioredoxin reductases necessary to combat oxidative stress. Furthermore, the complex I of the respiratory chain thought to generate reactive oxygen/nitrogen species was highly abundant in S. coelicolor. Oxidative stress was thus predicted to be high in S. coelicolor. In contrast, the S. lividans strains had rather similar proteins abundance for most pathways except for that involved into NAD(P)(H) metabolism. PptA being an accessory protein forcing polyphosphate into a conformation allowing their efficient use by various enzymes taking polyphosphate as a donor of phosphate and energy, including the ATP/Polyphosphate-dependent NAD kinase SCO1781, this suggested that the phosphorylation of NAD into NADP, would be inefficient in the pptA mutant resulting in low NADP(H) levels and thus high oxidative stress. Our results thus indicated that high oxidative stress is the common feature triggering ACT biosynthesis in S. coelicolor and in the pptA mutant of S. lividans.

More information: https://www.frontiersin.org/articles/10.3389/fmicb.2021.813993/full

contact: Marie-Joëlle VIROLLE <marie-joelle.virolle@i2bc.paris-saclay.fr>

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Essential role of hyperacetylated microtubules in innate immunity escape orchestrated by the EBV-encoded BHRF1 protein

Essential role of hyperacetylated microtubules in innate immunity escape orchestrated by the EBV-encoded BHRF1 protein | I2BC Paris-Saclay | Scoop.it

BHRF1, a multifunctional viral protein expressed during Epstein-Barr virus reactivation, modulates mitochondrial dynamics and induces MT hyperacetylation to escape innate immunity. Moreover, the loss of MT hyperacetylation impedes BHRF1 to initiate mitophagy, which is essential to inhibit the signaling pathway.

Innate immunity constitutes the first line of defense against viruses, in which mitochondria play an important role in the induction of the interferon (IFN) response. BHRF1, a multifunctional viral protein expressed during Epstein-Barr virus reactivation, modulates mitochondrial dynamics and disrupts the IFN signaling pathway. Mitochondria are mobile organelles that move through the cytoplasm thanks to the cytoskeleton and in particular the microtubule (MT) network. MTs undergo various post-translational modifications, among them tubulin acetylation. In this study, we demonstrated that BHRF1 induces MT hyperacetylation to escape innate immunity. Indeed, the expression of BHRF1 induces the clustering of shortened mitochondria next to the nucleus. This "mito-aggresome" is organized around the centrosome and its formation is MT-dependent. We also observed that the α-tubulin acetyltransferase ATAT1 interacts with BHRF1. Using ATAT1 knockdown or a non-acetylatable α-tubulin mutant, we demonstrated that this hyperacetylation is necessary for the mito-aggresome formation. Similar results were observed during EBV reactivation. We investigated the mechanism leading to the clustering of mitochondria, and we identified dyneins as motors that are required for mitochondrial clustering. Finally, we demonstrated that BHRF1 needs MT hyperacetylation to block the induction of the IFN response. Moreover, the loss of MT hyperacetylation blocks the localization of autophagosomes close to the mito-aggresome, impeding BHRF1 to initiate mitophagy, which is essential to inhibiting the signaling pathway. Therefore, our results reveal the role of the MT network, and its acetylation level, in the induction of a pro-viral mitophagy.

 

More information: https://journals.plos.org/plospathogens/article/authors?id=10.1371/journal.ppat.1010371

contact: Audrey ESCLATINE <audrey.esclatine@i2bc.paris-saclay.fr>

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ComFC mediates transport and handling of single-stranded DNA during natural transformation

ComFC mediates transport and handling of single-stranded DNA during natural transformation | I2BC Paris-Saclay | Scoop.it

ComFC, a protein essential for natural transformation, is a membrane-associated protein with affinity for ssDNA. This dual-specificity allows us to propose that it provides the link between the transport of the transforming DNA into the cytoplasm and its handling by the recombination machinery.

Natural transformation plays a major role in the spreading of antibiotic resistance genes and virulence factors. Whilst bacterial species display specificities in the molecular machineries allowing transforming DNA capture and integration into their genome, the ComFC protein is essential for natural transformation in all Gram- positive and -negative species studied. Despite this, its role remains largely unknown. Here, we show that Helicobacter pylori ComFC is not only involved in DNA transport through the cell membrane, but is required for the handling of the ssDNA once it is delivered into the cytoplasm. ComFC crystal structure revealed the presence of a zinc-finger motif and a putative phosphoribosyl transferase domain, both necessary for the protein's in vivo activity. ComFC is a membrane-associated protein with affinity for single-stranded DNA. Collectively, our results suggest that ComFC provides the link between the transport of the transforming DNA into the cytoplasm and its handling by the recombination machinery.

 

More information: https://doi.org/10.1038/s41467-022-29494-z

contact: Sophie QUEVILLON-CHERUEL <sophie.quevillon-cheruel@i2bc.paris-saclay.fr>

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Metabiodivex summer school

Metabiodivex summer school | I2BC Paris-Saclay | Scoop.it

METABIODIVEX, in which the I2BC is participating, and the IRN i-NPChem are organising the first thematic school entitled "Molecular Exploration of Biodiversity: New Challenges, New Strategies". It will take place from June 26 to July 1st 2022 in Aussois.

The themes will be :

- Chemodiversity in the era of "Big Data"
- Drug Discovery: Challenges and Strategies
- Evolution and diversity of plant metabolism
- Chemical ecology of marine organisms
- Discovery and production of microbial metabolites: from the gene to the molecule
- Digital chemistry and quantum computing

 

Registrations until May 15th 2022https://www.azur-colloque.fr/DR04/inscription

 

 More information: https://metabiodivex.sciencesconf.org/

 

Contact: Sylvie LAUTRU <sylvie.lautru@i2bc.paris-saclay.fr>

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Ecole thématique Ecoclim2022 - Orsay - 7 au 10 juin 2022

Ecole thématique Ecoclim2022 - Orsay - 7 au 10 juin 2022 | I2BC Paris-Saclay | Scoop.it

L'école thématique Ecoclim2022 aura lieu à Orsay du 7 au 10 juin 2022.  Cette école a pour objectif d'offrir une formation de base sur les enjeux environnementaux aux chercheuses et chercheurs de toutes disciplines.

 

Les renseignements et le formulaire d'inscription sont disponibles sur la page https://indico.ijclab.in2p3.fr/event/7951

Notez qu'un suivi en distanciel sera possible, de préférence pour les personnes en province, mais sans interaction possible. 

 

Les organisateurs : 

Guillaume Blanc et Guillaume Roux

 

Au programme

 

Cours introductif sur le climat

Jean-Yves Grandpeix (LMD)

 

Dérèglement climatique et impacts

Amaëlle Landais (LSCE)
Didier Paillard (LSCE)
Jeanne Gherardi (LSCE)
Mélanie Becker (LIENSs)

 

Cycles biogéochimiques, sols et agriculture

Bertrand Guenet (LG-ENS)
Julia Le Noé (ENS)
Petros Chatzimpiros (LIED)

 

Trajectoires de décarbonation

Henri Waisman (IDDRI)
Gilles Billen (METIS) ( à confirmer)
Aurélien Bigo ()
Emmanuelle Frenoux (LISN)
Tamara Ben Ari (iEES, Labo1point5)

 

Scénarios et modèles de sociétés

Luc Semal (CESCO)
Timothée Parrique (Lund University)
Emmanuel Combet / Valérie Quiniou / David Marchal (Ademe)

 

fedinan levi's curator insight, Today, 7:25 AM

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Scientific day in memory of Agnès Delahodde

Scientific day in memory of Agnès Delahodde | I2BC Paris-Saclay | Scoop.it
Throughout the day, there will be scientific presentations by colleagues and collaborators and personal tributes to Agnès Delahodde.

 

Josette Banroques - IBPC, Paris & Bruno Sargueil - Faculty of Pharmacy, Paris

DNA endonuclease and RNA maturase activities of two intron-encoded proteins from yeast mitochondria

Teresa Rinaldi - Universita la Sapienza, Rome

Mitochondrial function and lipids in S. cerevisiae

Monique Bolotin - GQE-Le Moulon, Gif-sur-Yvette

Vincent Procaccio - CHU, Angers

Disease modeling and drug screening of mitochondrial complex I disorders: from Podospora anserina to Human

Agnès Rötig - Institut Imagine, Paris & Véronique Paquis - CHU, Nice

Yeast does not lose the north or the south in the field of mitochondrial diseases:

 in the North Agnès Rötig

 in the South Véronique Paquis

Laras Pitayu - IJM, Paris

(Mitochondrial) Genome Stability Testimony

Renaud Legouis - I2BC, Gif-sur-Yvette

Mitochondrial rebuilding after acute heat stress relies on autophagy

 

Free but required registration before 22 April 2022

https://evento.renater.fr/survey/inscriptionjournee-d-hommage-agnes-delahodde-ideapch1

Capacity 200 people + Video broadcast

more information: here

Contact: day4agnes@i2bc.paris-saclay.fr

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23rd National Congress on Transposable elements (CNET) July 4th-6th

23rd National Congress on Transposable elements (CNET) July 4th-6th | I2BC Paris-Saclay | Scoop.it

We are pleased to announce the 23rd annual meeting organized by the French research community working on transposable elements (CNET).

This event gathers researchers interested in transposable elements, including population and comparative genomics, molecular and cellular mechanisms, ecology and evolution. This year the meeting will take place July 4–6 in Gif-sur-Yvette, near Paris.

We invite contributions including molecular, genetics and cellular studies, as well as bioinformatics and mathematical modeling approaches, applied to a wide range of model organisms (prokaryotes, plants, yeast, insects, ciliates, vertebrates, ...). The program will include invited talks, selected talks and ample time for poster presentation and discussions. Junior researchers are particularly encouraged to apply for oral presentations.

More information: here

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French Days of Photosynthesis: June 9th-10th

French Days of Photosynthesis: June 9th-10th | I2BC Paris-Saclay | Scoop.it

All information: here

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Distribution of Vibrionales' chromosome 2 in the gammaproteobacteria

Distribution of Vibrionales' chromosome 2 in the gammaproteobacteria | I2BC Paris-Saclay | Scoop.it

Plesiomonas shigelloides, an atypical Enterobacterales with a Vibrio-related secondary chromosome

Vibrionales and Enterobacterales are two closely related orders that derive from a common ancestor. While Vibrionales are multi-chromosome species, Enterobacterales are known to be mono-chromosome bacteria. What are the features and factors needed to ensure the sustainability of multiple chromosomes in a cell? We addressed this question by searching and identifying an Enterobacterium with multiple chromosomes, Plesiomonas shigelloides, and by carring out a comparative analysis of its genome and proteome with those of the mono-chromosome Enterobacterales and the multi-chromosome Vibrionales.

More information: https://academic.oup.com/gbe/article/14/2/evac011/6515279?login=true

Contact: Jean-Luc FERAT <jean-luc.ferat@i2bc.paris-saclay.fr>

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Scooped by I2BC Paris-Saclay
Scoop.it!

LivingMachines@Work opens 3 calls for proposals: Internship, Seeding, Meeting

LivingMachines@Work opens 3 calls for proposals: Internship, Seeding, Meeting | I2BC Paris-Saclay | Scoop.it

Apply to the first calls opened by LM@W in March 2022!

LivingMachines@Work (LM@W) is an interdisciplinary network of research teams within Paris-Saclay University dedicated to understand the structure and function of cellular machineries to innovate in health and biotechnology. LM@W is supported by 5 Graduate Schools: Life Sciences and Health, Biosphera, Computer Science, Mathematics and Physics.
LM@W opens 3 calls for proposals to support interdisciplinary internships, collaborative projects and the organization of meetings in the Paris-Saclay area

More information here.

Contact: LM@W  or Christophe Le Clainche

 

Scooped by I2BC Paris-Saclay
Scoop.it!

Precipitation of greigite and pyrite induced by Thermococcales: an advantage to live in Fe- and S-rich environments?

Precipitation of greigite and pyrite induced by Thermococcales: an advantage to live in Fe- and S-rich environments? | I2BC Paris-Saclay | Scoop.it

The diverse metabolic pathways and biologically induced mineralization mechanisms employed by Thermococcales would thus help them to survive in a broad range of extreme environments characterized by the high temperatures and high iron and sulfide contents.

Thermococcales, a major order of archaea inhabiting the iron- and sulfur-rich anaerobic parts of hydrothermal deep-sea vents, have been shown to rapidly produce abundant quantities of pyrite FeS2 in iron–sulfur-rich fluids at 85°C, suggesting that they may contribute to the formation of ‘low temperature’ FeS2 in their ecosystem. We show that this process operates in Thermococcus kodakarensis only when zero-valent sulfur is directly available as intracellular sulfur vesicles. Whether in the presence or absence of zero-valent sulfur, significant amounts of Fe3S4 greigite nanocrystals are formed extracellularly. We also show that mineralization of iron sulfides induces massive cell mortality but that concomitantly with the formation of greigite and/or pyrite, a new generation of cells can grow. This phenomenon is observed for Fe concentrations of 5 mM but not higher suggesting that above a threshold in the iron pulse all cells are lysed. We hypothesize that iron sulfides precipitation on former cell materials might induce the release of nutrients in the mineralization medium further used by a fraction of surviving non-mineralized cells allowing production of new alive cells. This suggests that biologically induced mineralization of iron-sulfides could be part of a survival strategy employed by Thermococcales to cope with mineralizing high-temperature hydrothermal environments.

More information: https://sfamjournals.onlinelibrary.wiley.com/doi/full/10.1111/1462-2920.15915

Contact: Aurore Gorlas  <aurore.gorlas@i2bc.paris-saclay.fr>

 

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Scooped by I2BC Paris-Saclay
Scoop.it!

Caveolin 1β promotes the production of active human microsomal glutathione S-transferase in induced intracellular vesicles in Spodoptera frugiperda 21 insect cells

Caveolin 1β promotes the production of active human microsomal glutathione S-transferase in induced intracellular vesicles in Spodoptera frugiperda 21 insect cells | I2BC Paris-Saclay | Scoop.it

Caveolin-1β kept its capacity to induce intracellular vesicles in the host when co-expressed with hMGST1 (human microsomal glutathione S-transferase 1) in Spodoptera frugiperda 21 (Sf21) insect cells. Moreover, hMGST1 increased its specific activity.

For a better understanding of membrane proteins cellular role, a detailed knowledge of their function and structure at a molecular level is required. For such studies, especially when combining site-directed mutagenesis and activity test experiments, membrane proteins are efficiently produced using overexpression in heterologous cell systems, among which insect cells. In mammalian cells, caveolin-1, an integral membrane protein of 21 kDa, is the main and characteristic membrane protein component of caveolae membranes. The heterologous expression in Spodoptera frugiperda 21 (Sf21) insect cells of the β isoform of canine caveolin-1 (caveolin-1β), using a baculovirus-based vector, resulted in intracellular vesicles enriched in caveolin-1β. We showed that caveolin-1β kept its capacity to induce intracellular vesicles in the host when co-expressed with hMGST1 (human microsomal glutathione S-transferase 1), and that hMGST1 is in part addressed to these vesicles. Remarkably, a fourfold increase in the amount of active hMGST1 was found in the most enriched membrane fraction, along with an increase of its specific activity by 60% when it was co-expressed with caveolin-1β. Thus, heterologously expressed caveolin-1β was able to induce cytoplasmic vesicles in which a co-expressed exogenous membrane protein is diverted and sequestered, providing a favorable environment for this cargo.

More information: https://doi.org/10.1016/j.bbamem.2022.183922

Contact: Nadège Jamin <nadege.jamin@i2bc.paris-saclay.fr>

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Scooped by I2BC Paris-Saclay
Scoop.it!

Structural convergence between inhibitors and a regulator of microtubule dynamics

Structural convergence between inhibitors and a regulator of microtubule dynamics | I2BC Paris-Saclay | Scoop.it

A region of CPAP, a protein regulating the length of the centrioles, is found to have a tubulin binding mode similar to that of bacterial and fungal peptide-like metabolites which inhibit cell division.

Microtubules are dynamic assemblies of αβ-tubulin that are involved in critical cellular functions in Eukaryotes, including cell division, ciliogenesis and intracellular transport. To fulfill these different functions, microtubules rearrange to form different types of networks, like the microtubule aster of interphasic cells or the mitotic spindle of dividing cells. They also form the architecture of well-defined structures like the centrioles. Relatedly, microtubule dynamics is regulated in the cell by different families of proteins. It is also inhibited by small molecules, some of which being used in oncology. The extent to which these compounds target the binding sites of cellular partners of tubulin remains poorly characterized. We have determined the structure of tubulin bound to the PN2-3 domain of CPAP, a protein controlling the length of the centrioles. Our results show in particular that the PN2-3 N-terminal region lies in a β-tubulin binding site known as the vinca domain. This site is also targeted by fungal and bacterial peptide-like inhibitors of tubulin, which share a very similar binding mode with CPAP. Therefore, our work identifies a structural convergence for tubulin binding between inhibitors and a regulator of microtubule dynamics.

More information: https://www.pnas.org/doi/10.1073/pnas.2120098119

Contact: Benoit GIGANT  <benoit.gigant@i2bc.paris-saclay.fr>

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6th edition of the Paris-Saclay Physics & Biological Systems conference PhysBio2022 - June 27-29 2022 - ENS Paris-Saclay.

6th edition of the Paris-Saclay Physics & Biological Systems conference PhysBio2022 - June 27-29 2022 - ENS Paris-Saclay. | I2BC Paris-Saclay | Scoop.it

Early-bird registrations are now open until the 15th of May at a discount rate, and free for students. 

The PhysBio conference series brings together international scientists working at the interface between Physics and Biology. The scope of the conference is intentionally broad, comprising cell and tissue mechanics, biomedical engineering, morphogenesis and self-assembling, but also instrumental and methodological developments.

This breadth of topics goes together with a focus on excellent speakers, to whom we provide long-format talks that allow them to make their latest research accessible to all attendants, non-specialists and students included.

As discoveries of the coming decades will come from young generations, PhysBio conference series is endowed with a student committee that selected a dozen of short talks from outstanding PhD students.  

Finally, we encourage all attendees to submit a poster contribution to initiate the discussion on their research topics with all the other participants.

Registration until May 15thhttp://lptms.u-psud.fr/physbio2022/registration/

 

The organizing committee,
Christophe Le Clainche, Martin Lenz, Karen Perronet, Marie-Claire Schanne-Klein, and François Treussart.

 

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Intensive week of training at Imagerie-Gif

Intensive week of training at Imagerie-Gif | I2BC Paris-Saclay | Scoop.it

Training was the key-word from 28th to 31th of March at Imagerie-Gif and for the 20 attendees of the annual cytometry workshop and the image analysis course. Attendees learnt the basis and advanced techniques of flow cytometry (https://cnrsformation.cnrs.fr/atelier-cytometrie?mc=Cytom%C3%A9trie%20-) under the supervision of Mickael Bourge, or have explored the marvellous world of image analysis during the training course about ImageJ, with Romain Le Bars.

fedinan levi's curator insight, Today, 7:26 AM

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Limited solvation of an electron donating tryptophan stabilizes a photoinduced charge-separated state in plant (6-4) photolyase.

Limited solvation of an electron donating tryptophan stabilizes a photoinduced charge-separated state in plant (6-4) photolyase. | I2BC Paris-Saclay | Scoop.it

Photoactivation of DNA repair enzyme 6-4 photolyase from A. thaliana found to be astonishingly efficient - due to limited ultrafast charge recombination and prevention of solvent access to the terminal tryptophan residue of its electron-transferring chain.

(6–4) Photolyases ((6–4) PLs) are ubiquitous photoenzymes that use the energy of sunlight to catalyze the repair of carcinogenic UV-induced DNA lesions, pyrimidine(6–4)pyrimidone photoproducts. To repair DNA, (6–4) PLs must first undergo so-called photoactivation, in which their excited flavin adenine dinucleotide (FAD) cofactor is reduced in one or two steps to catalytically active FADH− via a chain of three or four conserved tryptophan residues, transiently forming FAD•−/FADH− ⋯ TrpH•+ pairs separated by distances of 15 to 20 Å. Photolyases and related photoreceptors cryptochromes use a plethora of tricks to prevent charge recombination of photoinduced donor–acceptor pairs, such as chain branching and elongation, rapid deprotonation of TrpH•+ or protonation of FAD•−. Here, we address Arabidopsis thaliana (6–4) PL (At64) photoactivation by combining molecular biology, in vivo survival assays, static and time-resolved spectroscopy and computational methods. We conclude that At64 photoactivation is astonishingly efficient compared to related proteins—due to two factors: exceptionally low losses of photoinduced radical pairs through ultrafast recombination and prevention of solvent access to the terminal Trp3H•+, which significantly extends its lifetime. We propose that a highly conserved histidine residue adjacent to the 3rd Trp plays a key role in Trp3H•+ stabilization.

 

More information: https://www.nature.com/articles/s41598-022-08928-0 

Contact: Pavel MULLER <pavel.muller@i2bc.paris-saclay.fr >

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Micronutrient homeostasis in plants for more sustainable agriculture and healthier human nutrition

Micronutrient homeostasis in plants for more sustainable agriculture and healthier human nutrition | I2BC Paris-Saclay | Scoop.it

In this prospective review, the authors call for awareness of the importance of micronutrients in crop production and highlight the need for further research on this topic to meet the challenges of developing more sustainable and nutritious crops.

Plants need a range of essential micronutrients. Micronutrient deficiencies affect crop yield and quality in many countries. Mild or hidden micronutrient deficiency likely limits crop yields in much wider areas than those where obvious symptoms occur. Animals, including humans, also require micronutrients to be in good health. Insufficient amount and bioavailability of micronutrients in plant-based diets represent a major reason for the high prevalence of micronutrient deficiencies in human populations. In Europe, these deficiencies are a growing concern among pregnant women, children and elderly people, and are prone to become more severe with European diet transition towards vegetarianism. With this review, the authors call for awareness of the importance of micronutrients in crop production. They stress the need for better micronutrient nutrition in human populations, not only in developing but also in developed nations, and describe strategies to identify and characterize new varieties with high micronutrient content. Furthermore, they highlight how adequate nutrition of plants with micronutrients may improve metabolic functions and the capacity of plants to cope with abiotic and biotic constraints. Research in this area is expected to foster the development of sustainable and healthy food crops for human consumption. This review reports part of a prospective on the need for plant improvement in the EU project CropBooster-P (https://www.cropbooster-p.eu/). Its publication received the support of the COST action PLANTMETALS (https://plantmetals.eu/plantmetals-home.html).

more information: https://doi.org/10.1093/jxb/erac014

contact: Sébastien THOMINE <sebastien.thomine@i2bc.paris-saclay.fr>

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 Alex von Appen  seminar on April the 14th at 11.am: "Nuclear self-assembly following vertebrate mitosis” in I2BC Gif-sur-Yvette

 Alex von Appen  seminar on April the 14th at 11.am: "Nuclear self-assembly following vertebrate mitosis” in I2BC Gif-sur-Yvette | I2BC Paris-Saclay | Scoop.it

 "Nuclear self-assembly following vertebrate mitosis” is Alex von Appen  seminar on April the 14th at 11 am in the auditorium of building 21 at I2BC in CNRS Gif-sur-Yvette.

Abstract: During cell division, remodelling of the nuclear envelope enables chromosome segregation by the mitotic spindle1. The reformation of sealed nuclei requires ESCRTs (endosomal sorting complexes required for transport) and LEM2, a transmembrane ESCRT adaptor2-4. Here we show how the ability of LEM2 to condense on microtubules governs the activation of ESCRTs and coordinated spindle disassembly. The LEM motif of LEM2 binds BAF, conferring on LEM2 an affinity for chromatin5,6, while an adjacent low-complexity domain (LCD) promotes LEM2 phase separation. A proline-arginine-rich sequence within the LCD binds to microtubules and targets condensation of LEM2 to spindle microtubules that traverse the nascent nuclear envelope. Furthermore, the winged-helix domain of LEM2 activates the ESCRT-II/ESCRT-III hybrid protein CHMP7 to form co-oligomeric rings. Disruption of these events in human cells prevented the recruitment of downstream ESCRTs, compromised spindle disassembly, and led to defects in nuclear integrity and DNA damage. We propose that during nuclear reassembly LEM2 condenses into a liquid-like phase and coassembles with CHMP7 to form a macromolecular O-ring seal at the confluence between membranes, chromatin and the spindle. The properties of LEM2 described here, and the homologous architectures of related inner nuclear membrane proteins7,8, suggest that phase separation may contribute to other critical envelope functions, including interphase repair8-13 and chromatin organization14-17.

In reference to: LEM2 phase separation promotes ESCRT-mediated nuclear envelope reformation.

von Appen A, LaJoie D, Johnson IE, Trnka MJ, Pick SM, Burlingame AL, Ullman KS, Frost A.Nature. 2020 Jun;582(7810):115-118. doi: 10.1038/s41586-020-2232-x. Epub 2020 Apr 29.PMID: 32494070

Contact: Sophie Zinn-Justin <sophie.zinn@i2bc.paris-saclay.fr>

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Save the date! - I2BC PhD students' symposium - 16-17th June

Save the date! - I2BC PhD students' symposium - 16-17th June | I2BC Paris-Saclay | Scoop.it

 Today, we announce an exciting event organized on the CNRS campus of Gif-sur-Yvette, by the young scientists of I2BC and for I2BC doctoral students: the I2BC doctoral students' symposium.

Save the date : 16 & 17th June.

Essentially build around the scientific work of I2BC doctoral students, speakers will also be invited to these two days of seminars and posters. Participating in doctoral students' symposium gives you the opportunity to have an overview of the new projects of I2BC groups.

sofia carlos's curator insight, April 10, 8:46 PM
fedinan levi's curator insight, Today, 7:24 AM

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Scooped by I2BC Paris-Saclay
Scoop.it!

Insights into the photocatalytic cycle highlighted at I2BC

Insights into the photocatalytic cycle highlighted at I2BC | I2BC Paris-Saclay | Scoop.it

An iron–porphyrin bearing urea groups exhibits exceptional high performance for CO2-to-CO photocatalytic reduction.

A remarkable lesson from the functioning of the natural photosynthetic apparatus concerns the coupling of light-triggered single electron transfer events to the multi-electron catalysis.
In the present quest to use solar energy to convert H2O and CO2 to an energy vector, bioinspired synthetic models that can be activated by light are highly interesting to understand, and optimize, the photocatalytic process. Although terrific progress has been made in the field of electrocatalytic reduction of CO2 using molecular catalysts, powering these catalysts with the help of photosensitizers comes along with the challenge of minimizing deleterious photochemical events leading to poor quantum yields and/or catalyst deactivation.
Iron porphyrins are among the best molecular catalysts for the electrocatalytic CO2 reduction process. In this work the unprecedented photocatalytic activity of an iron porphyrin decorated with urea groups is reported. The photocatalytic system containing the catalyst, a photosensitizer and a sacrificial electron donor (SED) was investigated employing visible and infrared spectroscopy to gain insights into the catalytic mechanism (figure). The entry of UrFeII species in the cycle occurs by the reduction in the dark by the SED. The first photophysical event concerns the reductive quenching of the excited state of the photosensitizer that triggers an electron transfer to yield UrFeI intermediate. At this stage, CO2 binding, identified as the rate determining step, occurs prior to the formation of the catalytic-competent redox UrFe0 state. The input of two protons to release CO and a water molecule close the cycle regenerating the UrFeII state. DFT calculations were performed to bring support to these experimental findings.

More information: https://onlinelibrary.wiley.com/doi/10.1002/anie.202117530

Contact: Annamaria Quaranta <annamaria.quaranta@i2bc.paris-saclay.fr>

sofia carlos's curator insight, April 10, 8:46 PM
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