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Institute for Bioengineering and Biosciences
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Burkholderia Contaminans at a Cystic Fibrosis Center

Burkholderia Contaminans at a Cystic Fibrosis Center | iBB | Scoop.it

The taxonomy of Burkholderia cepacia complex (Bcc) has recently evolved significantly. The novel species B. contaminans and B. lata were proposed for a divergent group of bacteria formerly classified as B.cepacia recA K. In a recent publication in the Journal of Medical Microbiology, Carla Coutinho and Isabel Sá-Correia from BSRG-iBB, together with researchers from Hospital de Santa Maria (HSM) in Lisbon, have re-examined the taxonomic position, at the species level, of several isolates previously classified as B. cepacia recA K from a Bcc collection and also extended the identification to other isolates retrieved from CF patients under surveillance at the major Portuguese CF Center at HSM. During 15 years of epidemiological surveillance of respiratory infections involving Bcc in this Portuguese CF Center, B. contaminans was found to be involved in chronic and transient infections or to have been eradicated. The clinical outcome of the infected patients under study provided new information on the clinical impact of the rarely found B. contaminans species in CF respiratory infections. Click on tile to learn more.

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Molecular Evolution of the Drug:H+ Antiporter Family 1 in Pathogenic Candida Species

Molecular Evolution of the Drug:H+ Antiporter Family 1 in Pathogenic Candida Species | iBB | Scoop.it

Candida species colonize different body sites in healthy hosts but these yeasts are also opportunistic pathogens when an alteration in human microbial defenses occur. The high mortality rate of Candida bloodstream infections (candidemia) is related to their ability to develop resistance against multiple antifungal agents. In particular, two drug:H+ antiporters of family 1 (DHA1), Mdr1p and Flu1p, are known to underly the azole-resistance phenotype observed in many C. albicans clinical isolates.

In a recent paper published on the journal Genomics, iBB researchers of the Biological Sciences Research Group (BSRG) identified the whole set of DHA1 proteins encoded in the genomes of 31 hemiascomycetous strains, corresponding to 25 yeast species. Using phylogenetic tree building methodologies and comparative genomic approaches, the evolutionary history of the DHA1 encoding genes in the Hemiascomycetes was reconstructed, revealing that sixteen DHA1 lineages were conserved during pathogenic Candida species evolution. The evolution of C. albicans MDR1 and FLU1 genes and C. dubliniensis, C. tropicalis and C. parapsilosis MDR1 genes was detailed and gene duplication and loss were found to be major driving forces underlying the evolution of the DHA1 genes in Candida species.

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New Review on Yeast Toxicogenomics

New Review on Yeast Toxicogenomics | iBB | Scoop.it

The 2015 edition of the special issue Environmental Biotechnology published by Current Opinion in Biotechnology features a review on the field of yeast toxicogenomics, focusing on the role of this organism both as a cell model and as a cell factory. Toxicogenomics has emerged in the past decade as a transdisciplinary area that merges genome-wide methodologies with traditional toxicology studies to provide an integrated assessment of the cellular response to different toxicants at multiple levels. The invitation to write this review was made on the basis of the longstanding contribution of the Biological Sciences Research Group-iBB and its PI Isabel Sá-Correia to this field.
The still highly relevant role of yeast as a model organism is highlighted in this review, supported by the pioneering exploitation of multiple Omics approaches (genomics, proteomics, metabolomics, transcriptomics, lipidomics...) and synthetic biology, in fields ranging from the pharmaceutical industry to food preservation processes and identification of toxicological outcomes of exposure to environmental toxicants and agrochemicals. The review also describes the most recent advances in the production of next-generation biofuels based on renewable feedstocks such as lignocellulosic hydrolysates. Yeast is a cell factory of choice in biorefineries, where genomic and metabolic engineering are greatly contributing to develop more cost-efficient bioprocess conditions and more robust engineered strains. Click on the title to learn more.

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New Release of the YEASTRACT Database

New Release of the YEASTRACT Database | iBB | Scoop.it

Early this year, the newest version of the YEASTRACT database was released in a paper in Nucleic Acids Research, resulting from the effort of a team of researchers from the BSRG/IBB and the KDBIO/INESC-ID. The YEASTRACT information system has been an important tool for thousands of users from the Yeast and Systems Biology communities for the past decade. Its new version offers unprecedented tools for the analysis and prediction of the regulatory control in budding yeast, at gene and genomic levels. Click on title to learn more.

 

Photo details: Yeast cell membrane visualized with RFP and GFP fluorescent markers, Masur, 2006, GNU Free Documentation license.

http://commons.wikimedia.org/wiki/File:Yeast_membrane_proteins.jpg

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