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Institute for Bioengineering and Biosciences
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Celebrating a Milestone in mRNA manufacturing!

Celebrating a Milestone in mRNA manufacturing! | iBB | Scoop.it

We are delighted to announce that our paper "Maximizing MRNA Vaccine Production with Bayesian Optimization" has been recognised by Wiley as one of the most downloaded papers in Biotechnology and Bioengineering!
The paper steams from a collaboration between researchers from IBB (Sara Rosa, Miguel Prazeres and Ana Azevedo), UCL (Marco Marques) and FCUL/LASIGE (David Nunes and Luis Antunes), and explores the innovative use of machine learning, specifically Bayesian optimisation, to advance the field of mRNA production.
This award is testament to the dedication and hard work of the team, as we continue to drive innovation and make significant contributions to the field of biotechnology.

iBB's insight:

Check the award-winning paper here.

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Maximizing mRNA vaccine production with machine learning and Bayesian optimization approaches

Maximizing mRNA vaccine production with machine learning and Bayesian optimization approaches | iBB | Scoop.it

Messenger RNA (mRNA) vaccines are a new alternative to conventional vaccines with a prominent role in infectious disease control. These vaccines are produced by in vitro transcription (IVT) reactions, catalysed by a RNA polymerase.  In a recent joint research, published in Biotechnology and Bioengineering, Sara Sousa Rosa, Miguel Prazeres, Ana Azevedo from BERG-iBB, together with Marco Marques from UCL, and Davide Nunes and Luis Antunes from LASIG/FCUL, describe the use of a machine learning approach, namely Bayesian optimization, as a form of incremental adaptive design-of-experiments to maximise mRNA production. In only 60 runs, optimal reaction conditions that produced 12 g/L of mRNA in two-hours' time were found, outperforming published industry standards. These results show the potential of Bayesian optimization as a cost-effective optimization tool for (bio)chemical applications.

iBB's insight:

Check paper at: https://doi.org/10.1002/bit.28216

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mRNA Vaccine Manufacturing: Challenges and Bottlenecks

mRNA Vaccine Manufacturing: Challenges and Bottlenecks | iBB | Scoop.it

Vaccines are one of the most important tools in public health and play an important role in infectious diseases control. mRNA vaccines are reaching the stoplight as a new alternative to conventional vaccines due to their precision, safe profile and flexible manufacturing. In fact, the first Covid-19 vaccines to receive regulatory approval are based on mRNA technology. In a joint review just published in Vaccine, Sara Sousa Rosa, Miguel Prazeres, Ana Azevedo from BERG-iBB, together with Marco Marques from University College London, describe the current state-of-art of mRNA vaccines, focusing on the challenges and bottlenecks of manufacturing that need to be addressed to turn this new vaccination technology into an effective, fast and cost-effective response to emerging health crises.

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Anion exchange chromatography-based platform for the scalable purification of extracellular vesicles

Anion exchange chromatography-based platform for the scalable purification of extracellular vesicles | iBB | Scoop.it

Extracellular vesicles (EVs) are membrane vesicles fundamental for cellular communication processes. Either by taking advantage of EVs innate properties, or by loading them with therapeutic agents, EVs have emerged as cell-free strategies with diverse clinical applications. Indeed, when compared to mesenchymal stromal cells (MSCs), similar or better therapeutic benefits have been reported for MSC-derived EVs, thus explaining the increased interest in EVs over the years. Despite appealing features, EVs implementation in the clinic is still limited by technical difficulties, like robust isolation methods capable of delivering a high-quality product with high yield. In this work, published in the journal Separation and Purification Technology, we described anion exchange chromatography as a robust and better alternative to already implemented techniques. Following this strategy, more than 85% of injected EVs could be recovered, while complying with the stringencies set by regulatory agencies. This study developed at iBB was led by Dr. Ana Fernandes-Platzgummer and Prof. Ana Azevedo and co-first-authored by PhD students Ricardo Silva and Sara Sousa Rosa.

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Check full paper here.

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Magnetic Particles for the Purification of DNA Scaffolds for Biomanufacturing DNA-Origami Nanostructures

Magnetic Particles for the Purification of DNA Scaffolds for Biomanufacturing DNA-Origami Nanostructures | iBB | Scoop.it

Asymmetric PCR (aPCR) is often used to generate single-stranded DNA (ssDNA) scaffolds, which can then be assembled into nanoobjects by the DNA-origami technique. The scaffolds are usually purified by agarose gel extraction, a laborious, time consuming, limited, and non-scalable technique that presents low recovery yields, delivers low-quality products. To overcome such pitfalls, Ana Silva-Santos, Rui Silva, Sara Rosa and Miguel Prazeres from BERG-iBB, in collaboration with Pedro Paulo from CQE developed a simple, fast, and potentially scalable affinity-based method comprising magnetic particles. Specifically, scaffolds were synthesized by aPCR and purifed using magnetic particles functionalized with a 20 nt oligonucleotide complementary to the 3′ end of the target. The purified scaffolds were used to assemble 31 and 63 bp edge length tetrahedra with short oligonucleotides and thermal annealing, demonstrating the potential of affinity-based magnetic beads in the production of DNA-origami nanostructures. The work was published in ACS Applied Nanomaterials.

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