iBB
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Institute for Bioengineering and Biosciences
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Exploring N.C.Yeastract to Study Gene and Genomic Regulation in Non Conventional Yeasts

Exploring N.C.Yeastract to Study Gene and Genomic Regulation in Non Conventional Yeasts | iBB | Scoop.it

Responding to the recent interest of the yeast research community in non-Saccharomyces cerevisiae species of biotechnological relevance, the N.C.Yeastract was associated to YEASTRACT+, a curated repository of known regulatory associations between transcription factors (TFs) and target genes in yeasts. A recent Minireview published in FEMS Yeast Research aims to advertise the update of the existing information since the release of N.C.Yeastract in 2019, and to raise awareness in the community about its potential to help the day-to-day work on non-Saccharomyces species, exploring all the information and bioinformatics tools available in YEASTRACT +. Using simple and widely used examples, a guided exploitation is offered. The usage potentialities of the new CommunityYeastract platform by the yeast community are also discussed. The Minireview is coauthored by a BSRG-iBB team coordinated by Isabel Sá-Correia and including Cláudia P. Godinho, Margarida Palma, Miguel C. Teixeira and the PhD students Miguel Antunes and Marta N. Mota, in collaboration with INESC-ID colleagues.

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Controlling Biofilm Establishment Since the First Touch

Controlling Biofilm Establishment Since the First Touch | iBB | Scoop.it

Candida glabrata’s ability to cause human infections is tightly linked to its impressive ability to form persistent biofilms. The molecular control of this process is far from being clarified, as it lacks many of the typical features displayed by other Candida species. In this study, a combination of genetic screening, RNA-seq based transcriptomics, and Single-Cell Force Spectroscopy (SCFS), enabled the observation that the transcription factor CgEfg1, but not CgTec1, is necessary for the initial interaction of C. glabrata cells with both abiotic surfaces used in medical devices and epithelial cells, while both transcription factors orchestrate biofilm maturation. The knowledge gathered through this study by former PhD student Mafalda Cavalheiro, and an international team led by Miguel Cacho Teixeira, BSRG-iBB, including Etienne Dague, LAAS-CNRS, Geraldine Butler, University College Dublin, and Arsénio Fialho, BSRG-iBB, and just published in Communications Biology, is expected to contribute to guide the design of more successful therapeutic approaches.

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Development of Anti-Fouling Materials that Reduce Microbial Pathogen Adhesion

Development of Anti-Fouling Materials that Reduce Microbial Pathogen Adhesion | iBB | Scoop.it

The attachment of bacteria and other microbes to natural and artificial surfaces leads to the development of biofilms, which can further cause nosocomial infections. Thus, an important field of research is the development of new materials capable of preventing the initial adhesion of pathogenic microorganisms. In this work, novel polymer/particle composite materials were developed and characterized with respect to their mechanical, chemical and surface properties. Both S. aureus and C. glabrata exhibit a reduced capacity to adhere to the newly developed nanomaterials used in this study, thus showing their potential for bio-medical applications. This study, led by researchers from LAAS-CNRS, Toulouse, and co-authored by Mafalda Cavalheiro and Miguel Cacho Teixeira from BSRG-iBB, was just published in Nanomaterials.

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Prediction of the Haa1-regulatory Network in the Oleaginous Yeast Rhodotorula toruloides

Prediction of the Haa1-regulatory Network in the Oleaginous Yeast Rhodotorula toruloides | iBB | Scoop.it

A new bioinformatics tool, developed by our computational biologist collaborators at INESC-ID, is described in a recent article published in BMC Bioinformatics. The BSRG-iBB team contributed to the application of the tool to predict the putative Haa1-regulon in the lipid producing yeast cell factory Rhodotorula toruloides. For this, genomic information on this species was collected and included in the CommunityYeastract to benefit from the access to all the comparative genomics queries offered in the YEASTRACT + portal. The transcription factor Haa1 is the main regulator of S. cerevisiae genomic response to acetic acid stress, regulating, directly or indirectly, the majority of acetic acid tolerance genes. The prediction of RtHaa1-regulon has an expected impact in the optimization of R. toruloides robustness for biorefinery processes using hydrolysates from lignocellulosic residues. The BSRG-iBB team involved in these studies included the PhD student Miguel Antunes, his supervisor Isabel Sá-Correia, and Cláudia P. Godinho and Miguel C. Teixeira. 

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AntiMicrobial Peptide Resistance Conferred by a Polyamine Transporter: a New Virulence Mechanism

AntiMicrobial Peptide Resistance Conferred by a Polyamine Transporter: a New Virulence Mechanism | iBB | Scoop.it

Cellular components that contribute to both pathogenesis and drug resistance are among the most promising drug targets in human pathogens. In this study, the uncharacterized drug:H+ antiporter CgTpo4 was shown to play a role in Candida glabrata virulence in the infection model G. mellonella. The underlying mechanism was demonstrated to include a role in AntiMicrobial Peptide (AMP) resistance, compatible with the observed immune response deployed by G. mellonella upon C. glabrata infection. These results, emerging from a collaboration between BSRG members, led by Miguel Cacho Teixeira and including Arsénio Fialho and Dalila Mil-Homens, were just published in International Journal of Molecular Sciences and are expected to contribute to design more suitable antifungal therapeutic strategies.

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What Makes S. boulardii probiotic? A Transcriptomics View

What Makes S. boulardii probiotic? A Transcriptomics View | iBB | Scoop.it

Saccharomyces boulardii has been widely used, for more than 50 years, as a human probiotic. Nonetheless, the molecular basis underlying its mode of action is scarcely understood. In this study, global gene expression analysis, resorting to Illumina- based RNA-sequencing, was conducted to analyze differential gene expression patterns in S. cerevisiae and S. cerevisiae var. boulardii in GI- tract like medium. Additionally, based on the construction of an S. cerevisiae var. boulardii database, a global comparison between gene promoter sequences in S. cerevisiae and S. cerevisiae var. boulardii strains was conducted. The obtained results shed light into the molecular basis of the differential probiotic phenotypes displayed by these two closely related yeasts. The knowledge gathered through this study, by a team led by Miguel Cacho Teixeira, BSRG-iBB, and Pedro T Monteiro, INESC-ID, and just published in Genomics, is expected to contribute to guide the design of more rationale, probiotic-based, therapeutic approaches.

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