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The ways in which technology benefits healthcare
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Mathematical model predicts effect of bacterial mutations on antibiotic success

Mathematical model predicts effect of bacterial mutations on antibiotic success | healthcare technology | Scoop.it

Antibiotic resistance is a significant public health challenge, caused by changes in bacterial cells that allow them to survive drugs that are designed to kill them. Resistance often occurs through new mutations in bacteria that arise during the treatment of an infection. Understanding how this resistance emerges and spreads through bacterial populations is important to preventing treatment failure.

 

Scientists have developed a mathematical model that predicts how the number and effects of bacterial mutations leading to drug resistance will influence the success of antibiotic treatments.

 

Their model, described in the journal eLife, provides new insights on the emergence of drug resistance in clinical settings and hints at how to design novel treatment strategies that help avoid this resistance occurring.

"Mathematical models are a crucial tool for exploring the outcome of drug treatment and assessing the risk of the evolution of antibiotic resistance," explains first author Claudia Igler, Postdoctoral Researcher at ETH Zurich, Switzerland. "These models usually consider a single mutation, which leads to full drug resistance, but multiple mutations that increase antibiotic resistance in bacteria can occur. So there are some mutations that lead to a high level of resistance individually, and some that provide a small level of resistance individually but can accumulate to provide high-level resistance."

 

"Our work provides a crucial step in understanding the emergence of antibiotic resistance in clinically relevant treatment settings," says senior author Roland Regoes, Group Leader at ETH Zurich. "Together, our findings highlight the importance of measuring the level of antibiotic resistance granted by single mutations to help inform effective antimicrobial treatment strategies."

read the study paper at https://elifesciences.org/articles/64116

read the original unedited article at https://phys.org/news/2021-05-mathematical-effect-bacterial-mutations-antibiotic.html

nrip's insight:

Mathematical models are a crucial tool for exploring outcomes.

That they can be outcomes of drug treatment , and the further and deeper study into assessing the risk of the evolution of antibiotic resistance is fascinating. This is an excellent paper.

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Tencent partners with Medopad to improve Parkinson's disease treatment with AI

Tencent partners with Medopad to improve Parkinson's disease treatment with AI | healthcare technology | Scoop.it

Roughly 600,000 people in the U.S. are diagnosed with Parkinson’s every year, contributing to the more than 10 million people worldwide already living with the neurodegenerative disease. Early detection can result in significantly better treatment outcomes, but it’s notoriously difficult to test for Parkinson’s.

 

Tencent and health care firm Medopad have committed to trialing systems that tap artificial intelligence (AI) to improve diagnostic accuracy. They announced a collaboration with the Parkinson’s Center of Excellence at King’s College Hospital in London to develop software that can detect signs of Parkinson’s within minutes. (Currently, motor function assessments take about half an hour.)

 

This technology can help promote early diagnosis of Parkinson’s disease, screening, and daily evaluations of key functions.

 

Medopad’s tech, which uses a smartphone camera to monitor patients’ fine motor movements, is one of several apps and wearables the seven-year-old U.K. startup is actively developing.

 

It instructs patients to open and close a fist while it measures the amplitude and frequency of their finger movements, which the app converts into a graph for clinicians. The goal is to eventually, with the help of AI, teach the system to calculate a symptom severity score automatically.

 

Tencent and Medopad are far from the only firms applying AI to health care. Just last week, Google subsidiary DeepMind announced that it would use mammograms from Jikei University Hospital in Tokyo, Japan to refine its AI breast cancer detection algorithms. And last month Nvidia unveiled an AI system that generates synthetic scans of brain cancer

 

read the original story at https://venturebeat.com/2018/10/08/tencent-partners-with-medopad-to-improve-parkinsons-disease-treatment-with-ai/

 

 
nrip's insight:

Healthcare data is increasingly being analyzed and complex algorithms created to help various aspects of the healthcare ecosystem.

 

A big problem is the availability of huge data sets, and where available, the prevention of their misuse.  Its promising that Tencent has already been working on computer vision software that can diagnose skin cancer from pictures taken with a phone, and its AIMIS system already has the capability to detect esophageal cancer, lung sarcoidosis, and diabetic retinopathy from medical images

 

I have written previously on this, and it will be useful for patients and  if the data sets do help create both faster as well as more accurate detection algorithms in the future.

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'Personalized advantage index' a new decision-making tool

'Personalized advantage index' a new decision-making tool | healthcare technology | Scoop.it


One of the primary social motivations for scientific research is the ability to make better decisions based on the results.


But whether it is deciding what material to use in making a solar panel, what antibiotic to use on an infection or when to launch a satellite, most decisions involve weighing multiple factors, all of which interact with one another in determining the best course of action.


Now, researchers at the University of Pennsylvania and the University of Pittsburgh have developed a decision-making model that compares and weights multiple variables in order to predict the optimal choice.


They tested their model on data from a study of patients seeking treatment for depression, who received either cognitive behavioral therapy or medication. By using the model to generate a score for each patient that indicated which treatment was likely to be more effective for him or her, researchers showed an advantage equivalent to that of an effective treatment relative to a placebo.


Called the "predictive advantage index," this analytic tool could be used not just in personalized medicine but in any decision-making scenario with complex, and potentially conflicting, variables.


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A Lesson in Clinical Decision Support

A Lesson in Clinical Decision Support | healthcare technology | Scoop.it

A fundamental question about any (Clinical Decision Support System) CDS is just how good is it, i.e. does it get the right answer for generic and specific patients? If it doesn’t this may be the result of one or more issues such as flawed information having been used to build the system, flawed programming, or the patient being outside of an often undefined or ill defined population when for another population the CDS does actually provide the right answer


A common CDS disclaimer is that it is always up to the practitioner to second guess the CDS as necessary, or in other words, the CDS is not actually supposed to be relied upon. Depending on the complexity of the underlying theory and data, the practitioner may or may not in reality have the ability to do this, or they may not have a more rational basis for doing so than “I don’t think that is right”. Such a conclusion would put the practitioner outside of what might be considered a practice guideline. On the other hand if a CDS is easy to second guess, then it might not be very valuable in the first place.


In this context comes the recent controversy over the new cholesterol and statin on line “risk calculator”. As first reported in the New York Times, it was determined that an online risk calculator overestimated patient specific risk by an average of 100% (100 here is not a typo). If action were based on this erroneous calculator, statin therapy would be substantially over-prescribed. In this regard the Times cites a statement from the organizations that published the guidelines that will continue to be a CDS classic: patients and doctors should discuss treatment options rather than blindly follow a calculator. Or, in other words, it is not to be relied on.


Apparently the problem with the risk calculator is at least in part that the risk data on which it was based was decades old and therefore did not apply to the current US population which in at least some ways has actually gotten healthier. In addition the mathematical model used was one of linearly increasing risk which has not been demonstrated to be correct. Thus the flaws in the calculator were a result of the inappropriateness and lack of justification of the knowledge bases used to build it. Despite these fundamental issues, no plans to remove or revise the calculator were identified.


This risk calculator was not imbedded within an EHR, and it requires manual input of multiple patient parameters. And of course there are additional potentially relevant patient parameters that are not part of the calculation. However something like this certainly could be part of an EHR either by direct integration, or by pointing the EHR user to it and perhaps automatically using relevant patient information that might already be in the EHR. 


more at http://www.hitechanswers.net/lesson-clinical-decision-support/

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Python as a tool for e-health systems by Diana Pholo

E-health has proven to have many benefits including reduced errors in medical diagnosis.


A number of machine learning (ML) techniques have been applied in medical diagnosis, each having its benefits and disadvantages.

With its powerful pre-built libraries, Python is great for implementing machine learning in the medical field, where many people do not have an Artificial Intelligence background.

This talk will focus on applying ML on medical datasets using Scikit-learn, a Python module that comes packed with various machine learning algorithms. It will be structured as follows:

  • An introduction to e-health.
  • Types of medical data.
  • Some Benchmark algorithms used in medical diagnosis: Decision trees, K-Nearest Neighbours, Naive Bayes and Support Vector Machines.
  • How to implement benchmark algorithms using Scikit-learn.
  • Performance evaluation metrics used in e-health.


This talk is aimed at people interested in real-life applications of machine learning using Python. Although centered around ML in medicine, the acquired skills can be extended to other fields.

About the speaker: Diana Pholo is a PhD student and lecturer in the department of Computer Systems Engineering, at the Tshwane University of Technology.

Here is her Linkedin profile: https://za.linkedin.com/in/diana-pholo-76ba803b

 

 

access the deck and the original article at https://speakerdeck.com/pyconza/python-as-a-tool-for-e-health-systems-by-diana-pholo

 

nrip's insight:

Finally something for the coders who follow this blog. This is a good kickstarter for a weekend to spend coding learning algos in python 

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Harnessing data to improve patient outcomes

Harnessing data to improve patient outcomes | healthcare technology | Scoop.it

As data and analytics are increasingly leveraged in various aspects of the healthcare system, some companies are  making use of such capabilities to help clinicians make the best decisions for patients.

 

One such company is naviHealth.  Based in Brentwood, Tennessee, naviHealth provides both payers and providers with post-acute care management expertise. Its nH Predict tool allows clinicians to better predict a patient’s outcomes in order to craft a personalized post-acute care plan.

 

Using NaviHealths nH Predict tool, clinicians are better able to predict a patient's outcomes and generate a personalized post-acute care plan.

 

The result of the tool is a simple outcome report that is generated at the beginning of the patient’s stay in a facility or hospital. The report breaks down the patient’s basic information as well as how they’re doing in a variety of categories.

 

For instance, nH Predict outlines the individual’s gender, date of birth and admission date. It also includes their primary diagnostic group (such as COPD) and their usual living setting (like at home alone or in an assisted living facility).

 

Finally, the outcome report provides a score for a few of the patient’s functions based on the data of similar patients. It gives a score on the patient’s basic mobility (such as wheelchair skills or ability to take the stairs); daily activity (like bathing and dressing); and applied cognition (including memory and communication).

 

Additionally, the report creates a total average score for the patient based on their mobility, activity and cognition scores.

 

read the complete story at https://medcitynews.com/2018/10/navihealth-data-patient-outcomes/

 

nrip's insight:

Nowadays, healthcare data is increasingly being analyzed and complex algorithms created to help various aspects of the healthcare ecosystem.

 

This technique where some companies are  making use of such capabilities to help clinicians make the best decisions for patients, is also not new, and there are startups and enthusiasts working on building self learning algorithms to modify clinical pathways to create better patient outcomes in India, Singapore, Scandanavia. If you are working on something similar, please drop me a note. 

 

Beyond the hype, it will be interesting to see if the hypothesized benefits actually translate into reality. 

 

Plus91's R&D has stayed away from improving/modifying/changing medical care plans but instead we built self learning models both for early detection of diseases, as well as for early prediction of epidemics, and while we have been very successful with demonstrating epidemic prediction, and actually preventing it in 2 cases already, the same success is unfortunately not achieved yet in disease detection. 

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EHR Promotes Better Understanding of Multiple Sclerosis

EHR Promotes Better Understanding of Multiple Sclerosis | healthcare technology | Scoop.it

Researchers at Vanderbilt University Medical Center have used natural language processing technology in an electronic medical records system to identify patients with multiple sclerosis and collect data on traits of their disease course.


The work is significant, researchers say, because much remains unknown about the course of the disease, which varies widely among patients. “Most research studies have focused on the origin of the disease, partly because of the difficulty in ascertaining sufficient longitudinal clinical data to study the disease course,” according to the study published in the Journal of the American Medical Informatics Association.


“Electronic medical records may provide such a tool. We have previously shown that genomic signals of MS risk may be replicated using EMR-derived cohorts. In this paper, we evaluated algorithms to extract detailed clinical information for the disease course of MS.”


The study used algorithms based on ICD-9 codes, text keywords and medications to identify 5,789 patients with MS, and collected detailed data on the clinical course of the patients’ disease to measure progression of disability. “For all clinical traits extracted, precision was at least 87 percent and specificity was greater than 80 percent.”


 
Tech4MD's curator insight, December 27, 2013 2:52 PM

Good benefit of using a good EHR!