Genetic Engineering in the Press by GEG
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New open-source software tool could accelerate genetic discoveries

New open-source software tool could accelerate genetic discoveries | Genetic Engineering in the Press by GEG | Scoop.it
Commercially viable biofuel crops are vital to reducing greenhouse gas emissions, and a new tool developed by the Center for Advanced Bioenergy and Bioproducts Innovation should accelerate their development -; as well as genetic editing advances overall.
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CROPSR is the first open source software tool for genome-wide design and evaluation of guide RNA (gRNA) sequences for CRISPR experiments, created by scientists at CABBI, a Department of Energy-funded Bioenergy Research Center (BRC). The genome-wide approach significantly shortens the time needed to design a CRISPR experiment, reducing the challenge of working with crops and speeding up the design, evaluation and validation of gRNA sequences, according to the study published in BMC Bioinformatics. To better meet the needs of crop geneticists, the team built software that lifts restrictions imposed by other packages on the design and evaluation of gRNA sequences, the guides used to locate targeted genetic material. Team members also developed a new machine learning model that would not avoid guides for repetitive genomic regions often found in plants, a problem with existing tools. The CROPSR scoring model provided much more accurate predictions, even in non-crop genomes. In the future, he hopes researchers will record their failures as well as their successes to help generate the data needed to train a non-specific model.   

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FDA Requires Boxed Warning for Risk of T-Cell Malignancies With Approved CAR T-Cell Therapies

FDA Requires Boxed Warning for Risk of T-Cell Malignancies With Approved CAR T-Cell Therapies | Genetic Engineering in the Press by GEG | Scoop.it
The FDA has mandated that the boxed warning for all approved CAR T-cell therapies be updated to include the serious risk of T-cell malignancies.
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The FDA has required that the boxed warning for all approved CAR T cell therapies be updated to include the serious risk of T cell malignancies. The agency is also requiring updates to other sections of the labels concerning warnings and precautions, post-marketing experience, patient counseling information and the medication guide. The FDA said patients and clinical trial participants receiving CAR-T cell therapy should be monitored throughout their lives for secondary malignancies. The FDA added that manufacturers should be contacted if a new malignancy occurs after treatment with any of the products listed below, as all currently approved BCMA- and CD19-directed CAR T cell products carry a serious risk of T cell malignancies.

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 Cancer Cells Deliver CRISPR to Fight Cancer

 Cancer Cells Deliver CRISPR to Fight Cancer | Genetic Engineering in the Press by GEG | Scoop.it
In a remarkable study, researchers have developed a novel CRISPR-Cas9 delivery system utilising cryo-shocked lung tumour cells to target non-small cell lung cancer (NSCLC), particularly those with KRAS mutations. This innovative method, leveraging the concept of synthetic lethality, shows promise in improving the targeting efficiency o
BigField GEG Tech's insight:

In a study, researchers have developed a novel CRISPR-Cas9 delivery system using cryo-choked lung tumor cells to target Non-Small Cell Lung Cancer (NSCLC), particularly those with KRAS mutations. The technique involves using lung tumor cells treated by rapid shock with liquid nitrogen, effectively inactivating their pathogenicity while preserving their structure and surface receptors. These cryo-choked cells serve as carriers for CRISPR-Cas9, which aims to edit the CDK4 gene, a key player in the proliferation of KRAS-mutant NSCLC cells. In NSCLC carrier mice, in vivo injection of packaged CRISPR-Cas9 plasmids into cryo-choked lung cancer cells led to an almost four-fold higher concentration in the lungs compared with administration by lipofectamine. The new CRISPR delivery system showed a significant reduction in tumor size and prolonged survival, marking an important advance in the use of gene editing for cancer treatment.

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Key Charpentier/Doudna CRISPR patent upheld by China National Intellectual Property Administration

Key Charpentier/Doudna CRISPR patent upheld by China National Intellectual Property Administration | Genetic Engineering in the Press by GEG | Scoop.it
RS Genomics Limited, which was formed to provide broad access to the foundational CRISPR/Cas9 intellectual property co-owned by Dr. Emmanuelle Charpentier, today announced its patent CN201380038920.6 was upheld by the CNIPA in response to an invalidation challenge.
BigField GEG Tech's insight:

RS Genomics Limited, a company sharing fundamental CRISPR/Cas9 intellectual property with Dr Emmanuelle Charpentier, recently announced the confirmation of its patent CN201380038920.6 by the China National Intellectual Property Administration (CNIPA), following an invalidation challenge. This patent (collectively known as CVC), filed by Dr Charpentier and his collaborators from the Regents of the University of California and the University of Vienna, relates to "Methods and compositions for RNA-guided modification of target DNA and for RNA-guided regulation of transcription", a major breakthrough in the field of genetics. The decision to maintain patent rights in China follows a recent decision by the Japanese Patent Office earlier this year to maintain JP6692856, which is also part of the CVC portfolio. In the course of the proceedings, both novelty and inventive step were challenged. In the decision, the CNIPA rejected both challenges to patentability, stating in particular that the priority application allowed the use of CRISPR/Cas9 in eukaryotic cells.

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Concomitant pharmacotherapy overcomes immunotherapy challenges in aggressive blood cancer

Concomitant pharmacotherapy overcomes immunotherapy challenges in aggressive blood cancer | Genetic Engineering in the Press by GEG | Scoop.it
Researchers at the University of Zurich and the University Hospital Zurich have discovered that a specific mutation in the cancer cells of an aggressive type of blood cancer can prevent novel immunotherapies such as CAR T-cell therapy from working.
BigField GEG Tech's insight:

Acute myeloid leukemia (AML) is an aggressive form of blood cancer. It is caused by mutations in a large number of genes acquired during a person's lifetime. One of these genes, the tumor suppressor gene TP53, plays a key role. Normally, TP53 helps prevent the development of tumors. However, blood cancer patients with this mutated gene face an extremely poor prognosis, as their genes are resistant to conventional chemotherapeutic agents. Intensive research is therefore being carried out into new therapeutic approaches, such as CAR T lymphocytes, already successfully used for other blood cancers. In particular, an international research team has shown that TP53 mutant AML cells are significantly more resistant to CAR T cell therapy than AML cells without the mutated gene. In their study, the researchers not only examined the mechanism underlying the resistance of mutated AML cells to CAR T cell immunotherapy, but also discovered how the endurance of CAR T cells can be increased, and how a weak point in TP53 mutant AML cells can be exploited to overcome this resistance. 

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Breakthrough immunotherapy targets non-cancer cells to prevent breast cancer spread

Breakthrough immunotherapy targets non-cancer cells to prevent breast cancer spread | Genetic Engineering in the Press by GEG | Scoop.it
A new type of immunotherapy that targets non-cancer cells could help prevent the growth and spread of breast cancer tumors, according to new research funded by Breast Cancer Now.
BigField GEG Tech's insight:

Researchers have carried out a study of CAR-T cells in breast cancer. However, this therapy doesn't always work on tumors, as their environment suppresses the immune response, and it can also be difficult to find specific features of breast cancer cells to target. To circumvent these challenges, the team directed CAR-T cells at cells surrounding the tumor's blood supply that make the protein endosialin, rather than at actual cancer cells. In experiments with mice, targeting endosialin successfully reduced the growth and spread of breast cancer. The team also tested the treatment on lung cancer tumors in mice and found similar results, suggesting that patients with other types of cancer could benefit from the new treatment too. Moreover, the researchers found that CAR-T therapy does not affect cells without endosialin, indicating that it could work as a cancer-specific treatment with potentially fewer side effects for patients.

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Increased Understanding of CLL Tumor Biology Unlocks Targeted CAR T-Cell Approaches

Increased Understanding of CLL Tumor Biology Unlocks Targeted CAR T-Cell Approaches | Genetic Engineering in the Press by GEG | Scoop.it
Jan Joseph Melenhorst, PhD, emphasizes how research investigating chronic lymphocytic leukemia biology may result in more targeted CAR T-cell products.
BigField GEG Tech's insight:

Jan Joseph Melenhorst, renowned expert in cancer immunology, emphasizes the importance of understanding the nuances of chronic lymphocytic leukemia (CLL) biology in the development of more effective CAR-T cell therapies. The research reveals significant differences in disease behavior between lymph nodes and blood, which could lead to more targeted treatments. Melenhorst highlights the low sustained response rate to existing CAR-T therapies in CLL, underlining the importance of T-cell health and the need for effective tumor cell activation to improve the efficacy of these treatments. The selection of specific target antigens, such as ROR1, and tumor cell activation are key factors in the design of more effective CAR-T therapies. Melenhorst also discusses the potential of combination therapies and the importance of prior T-cell selection, pointing to promising directions for future research and improved response rates in CLL.

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Innovative immunotherapy targets rare melanoma subtypes

Innovative immunotherapy targets rare melanoma subtypes | Genetic Engineering in the Press by GEG | Scoop.it
Scientists at the UCLA Health Jonsson Comprehensive Cancer Center have built and demonstrated the potential efficacy of a new chimeric antigen receptor (CAR) T-cell-based immunotherapy specifically designed to treat patients with cutaneous and rare subtypes of melanoma.
BigField GEG Tech's insight:

Despite the success of immune checkpoint blockade, a considerable number of melanoma patients do not respond well or suffer relapse after initial success. To find better ways of using CAR T cells to treat melanoma, researchers first looked for an antigen that could be used to target a protein expressed on the surface of cancer cells, but showing lower expression in normal cells. By analyzing three different melanoma datasets, they identified TYRP1, which plays a key role in melanin synthesis, and its surface expression is higher in melanoma cells than in normal tissue. The researchers showed that 60% of acral and mucosal melanoma patients and around 90% of uveal melanoma patients overexpress TYRP1. To investigate the potential new target, the team designed a CAR construct that specifically targeted cells with high TYRP1 expression, and then tested the newly designed CAR T cell in different types of melanoma models. According to their study, CAR T cells completely eradicated cancer cells in cell lines and animal models, showing promising results without inducing toxicity or causing treatment-related adverse effects. The research team plans to launch a clinical trial to evaluate the efficacy of CAR T cells.

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News: Intellia Therapeutics Announces Publication of Positive Interim Phase 1 Data for NTLA-2002 in Hereditary Angioedema

News: Intellia Therapeutics Announces Publication of Positive Interim Phase 1 Data for NTLA-2002 in Hereditary Angioedema | Genetic Engineering in the Press by GEG | Scoop.it
Intellia Therapeutics shares interim clinical results from the Phase 1 portion of the ongoing Phase 1/2 trial of NTLA-2002 in hereditary angioedema (HAE). NTLA-2002 is an investigational in vivo CRISPR-based gene editing therapy in development as a single-dose treatment for HAE, and the results were were published online in the Ne
BigField GEG Tech's insight:

Hereditary angioedema (HAE) is a rare genetic disorder characterized by severe inflammatory attacks accompanied by swelling of various organs and tissues. Plasma kallikrein is a protein known to drive multiple inflammatory pathways, including the production of the inflammatory mediator bradykinin, which is overproduced in HAE. Researchers have therefore developed the NTLA-2002 treatment, which is designed to eliminate the target gene kallikrein B1 in hepatocytes. It is administered intravenously as a single dose of Cas9 mRNA and gRNA via lipid nanoparticles. Preclinical studies have demonstrated a sustained and therapeutically relevant reduction in plasma kallikrein activity after a single dose in non-human primates, and the candidate is currently being evaluated in a Phase 1/2 combination clinical trial to assess its safety, tolerability, pharmacokinetics and pharmacodynamics. Clinical data from the Phase 1 dose-escalation portion of this trial showed that a single dose of NTLA-2002 produced robust, dose-dependent and durable reductions in total plasma kallikrein levels, and no serious adverse events were observed. In addition, a reduction in the number of angioedema attacks per month was observed at all dose levels (25 mg, 50 mg or 75 mg).

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Penn analysis shows low risk of secondary cancers following CAR T cell therapy

Penn analysis shows low risk of secondary cancers following CAR T cell therapy | Genetic Engineering in the Press by GEG | Scoop.it
The development of any type of second cancer following CAR T cell therapy is a rare occurrence, as found in an analysis of more than 400 patients treated at Penn Medicine, researchers from the Perelman School of Medicine at the University of Pennsylvania reported today in Nature Medicine.
BigField GEG Tech's insight:

Researchers at the University of Pennsylvania's Perelman School of Medicine have conducted a study, published in Nature Medicine, which shows that the development of any type of second cancer after CAR T cell therapy is a rare phenomenon. Of 449 patients treated with commercially available CAR T cell therapies at Penn Medicine between January 2018 and November 2023, only 16 were diagnosed with a second cancer after receiving CAR T cell therapy. Most of the secondary cancers (12 of 16) were solid tumors, including skin cancer, prostate cancer and lung cancer. In one patient who developed a secondary lung tumor after CAR T cell therapy, an incidental T-cell lymphoma was also identified in a lymph node removed during surgery for the lung tumor. Molecular analyses showed that the T-cell lymphoma did not harbor the CAR transgene, meaning that it was not a CAR-positive lymphoma and that there was no clear link with CAR T cell therapy.

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CRISPR-Based Anti-CD19 CAR T-Cell Therapy Is Safe and Effective in Relapsed/Refractory NHL

CRISPR-Based Anti-CD19 CAR T-Cell Therapy Is Safe and Effective in Relapsed/Refractory NHL | Genetic Engineering in the Press by GEG | Scoop.it
BRL-201 had a manageable safety profile and elicited early indications of efficacy in patients with relapsed/refractory non-Hodgkin lymphoma.
BigField GEG Tech's insight:

The CD19-directed, non-viral, PD-1 locus-specific, CRISPR-based integrated CAR T cell therapy BRL-201 was associated with a manageable safety profile and elicited early indications of efficacy in patients with relapsed and refractory non-Hodgkin's lymphoma (NHL), according to results from a first-in-man Phase 1 trial (NCT04213469). No dose-limiting toxicity (DLT) was observed in any of the patient cohorts infused with BRL-201. However, cytopenias were observed at all doses, although most cases resolved without intervention. Furthermore, at the data collection cut-off date of May 17, 2023 and a median follow-up of 29.0 months (range: 21.5 to 36.2), all patients responded to BRL-201 infusion, of whom 85.7% achieved a complete response (CR) and 14.3% a partial response (PR). Of the patients who achieved and maintained a CR, 7 showed continuous responses at the data cut-off. Notably, the 3-month, 6-month and 12-month overall response rates (ORR) were 80.9%, 71.4% and 57.1% respectively.

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FDA Approves Label Updates to Include New Data for Axi-Cel in LBCL, Zanubrutinib in CLL

FDA Approves Label Updates to Include New Data for Axi-Cel in LBCL, Zanubrutinib in CLL | Genetic Engineering in the Press by GEG | Scoop.it
The FDA has approved label updates for zanubrutinib to include data from the ALPINE trial in relapsed/refractory chronic lymphocytic leukemia, and axicabtagene ciloleucel to include findings from the primary overall survival analysis of the ZUMA-7 trial in relapsed/refractory large B-cell lymphoma.
BigField GEG Tech's insight:

The FDA has approved label updates for zanubbrutinib (Brukinsa) to include positive progression-free survival (PFS) data from the phase 3 ALPINE trial (NCT03734016) in patients with relapsed and/or refractory chronic lymphocytic leukemia (CLL), and axicabtagene ciloleucel (axi-cel ; Yescarta) to include results from the primary overall survival (OS) analysis of the phase 3 ZUMA-7 trial (NCT03391466) in patients with relapsed and/or refractory large B-cell lymphoma (DLBCL). The updated label for zanubbrutinib is based on data from an analysis in which the second-generation BTK inhibitor improved PFS over ibrutinib (Imbruvica) and demonstrated a favorable cardiac safety profile in patients with relapsed and/or refractory CLL. The label update for axi-cel is based on the results of the ZUMA-7 trial, in which treatment with CD19-directed CAR-T cells resulted in a 27.4% reduction in the risk of death compared with standard care, as second-line curative therapy in patients with relapsed and/or refractory CLL within 12 months of the end of first-line treatment.

 

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Key Charpentier/Doudna CRISPR patent upheld by Japanese Patent Office

Key Charpentier/Doudna CRISPR patent upheld by Japanese Patent Office | Genetic Engineering in the Press by GEG | Scoop.it
Patent JP6692856 upheld for second time in response to invalidation challenge.
BigField GEG Tech's insight:

ERS Genomics Limited, which was set up to provide broad access to CRISPR-Cas9's fundamental intellectual property co-owned by Dr Emmanuelle Charpentier, has announced that its second Japanese patent (JP6692856) has been confirmed for the second time, in response to an invalidation challenge. In the course of the proceedings, both novelty and inventive step were contested. However, the Japanese Patent Office (JPO) rejected both challenges to patentability, fully confirming the patent and further demonstrating its validity and value. Previously, in 2021, the patent filed by Dr Charpentier in collaboration with the Regents of the University of California and the University of Vienna had also been confirmed by the JPO.

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Double punch for B-cell lymphomas: CAR T-cell innovation boosts efficacy, cuts toxicity

Double punch for B-cell lymphomas: CAR T-cell innovation boosts efficacy, cuts toxicity | Genetic Engineering in the Press by GEG | Scoop.it
The Malaghan Institute of Medical Research in collaboration with Wellington Zhaotai Therapies Limited today announced results of its phase 1 dose escalation trial of a new third-generation anti-CD19 chimeric antigen receptor (CAR) T-cell therapy to be presented at the American Society of Hematology (ASH) Annual Meeting in San Diego on 11 December, 3pm.
BigField GEG Tech's insight:

Anti-CD19 CAR T lymphocytes with a CD28 co-stimulatory domain, such as axicabtagene ciloleucel and brexucabtagene autoleucel, are among the most effective CAR T cell therapies for B-cell non-Hodgkin's lymphoma, but are associated with neurotoxicity in around half of recipients, and cytokine release syndrome (CRS) in up to 90%. Researchers have developed a third-generation autologous anti-CD19 CAR T product, which combines CD28 with a Toll-like receptor 2 (TLR2) co-stimulatory domain. Twenty-one patients with relapsed or refractory B-cell non-Hodgkin's lymphoma were treated in the dose-escalation cohort of a Phase 1 trial and completed the primary follow-up period. No dose-limiting toxicities occurred at the recommended doses. In preclinical studies, the addition of the TLR2 domain maintained or improved efficacy, while reducing production of the pro-inflammatory cytokines IFN-γ and GM-CSF, which are implicated in CRS and associated neurotoxicity syndrome, compared with a CAR with CD28 co-stimulation alone. The absence of neurotoxicity with CD28-based anti-CD19 CAR T cell therapy is remarkable. The addition of the intracellular TLR2 domain with CD28 and CD3ζ alters the cytokine profile of CAR T cells and may explain these clinical results.

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FDA approves earlier use of Carvykti CAR-T for multiple myeloma

FDA approves earlier use of Carvykti CAR-T for multiple myeloma | Genetic Engineering in the Press by GEG | Scoop.it
The FDA approved ciltacabtagene autoleucel for earlier use in certain adults with relapsed or refractory multiple myeloma. The expanded indication permits treatment with the chimeric antigen receptor T cells after first relapse and applies to adults who are refractory to lenalidomide and have received at least one previous line of therapy, including a proteasome inhibitor and an immunomodulatory
BigField GEG Tech's insight:

The FDA has approved ciltacabtagene autoleucel for earlier use in certain adults with relapsed or refractory multiple myeloma. Ciltacabtagene autoleucel (Carvykti; Janssen, Legend Biotech), also known as cilta-cel, is a B-cell maturation antigen (BCMA)-directed CAR T cell therapy previously approved for use in adults with relapsed or refractory multiple myeloma after four lines of treatment. The expanded indication allows treatment with chimeric antigen receptor T cells after the first relapse and applies to lenalidomide-refractory adults who have received at least one prior line of treatment, including a proteasome inhibitor and an immunomodulatory agent. In the Phase 3 CARTITUDE-4 trial, Cilta-cel reduced disease progression or death by 59% when used as a prior line of treatment compared with standard therapy. Patients in the cilta-cel group had a higher total mortality rate than standard treatment, including mortality in the first 10 months after randomization to treatment, but still presented a positive risk-benefit analysis in the eyes of the Committee  .

 

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Cleavable Plasmids Allow for Precise Gene Editing in Adult Organs

Cleavable Plasmids Allow for Precise Gene Editing in Adult Organs | Genetic Engineering in the Press by GEG | Scoop.it
Researchers have unveiled a novel method utilising in vivo cleavable donor plasmids for CRISPR-Cas9 and CRISPR-Cas12a, significantly enhancing gene editing efficiency in adult mouse livers. This method employs hydrodynamic delivery of targeting plasmids, showcasing a substantial improvement over traditional techniques.
BigField GEG Tech's insight:

The integration of cleavable donor plasmids with hydrodynamic delivery opens up new avenues for treating genetic disorders. Cleavable donor plasmids imply that when the CRISPR-Cas system is directed to a specific location in the genome where a modification is desired, the Cas enzyme not only cleaves genomic DNA at the targeted site, but can also cleave the donor plasmid at the designated sites. This cleavage releases the donor DNA segment, which is then inserted into the genome at the cleavage site via the cell's natural DNA repair mechanisms. In addition, hydrodynamic delivery, a non-viral method, was used for its efficacy and safety compared to viral-based delivery systems. This approach mitigates the risks associated with the host immune response to viral vectors and undesirable mutations due to sustained nuclease expression. The research conducted precise in-frame knock-ins using CRISPR-Cas9 and Cas12a systems, successfully integrating reporter gene cassettes into targeted genomic loci in adult mouse liver. The results demonstrate the system's precise gene-editing capability and its potential applicability in therapeutic contexts. 

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CRISPR-based diagnostics for rapid oral pathogen detection

CRISPR-based diagnostics for rapid oral pathogen detection | Genetic Engineering in the Press by GEG | Scoop.it
A study aiming to develop a low-cost, rapid detection technique for the widescale detection and screening of oral microorganisms suitable for point-of-care settings was presented at the 102nd General Session of the IADR, which was held in conjunction with the 53rd Annual Meeting of the American Association for Dental, Oral, and Craniofacial Research and the 48th Annual Meeting of the Canadian Association for Dental Research, on March 13-16, 2024, in New Orleans, LA, USA.
BigField GEG Tech's insight:

The study adapted the novel CRISPR-Cas Specific High-Sensitivity Enzymatic Reporter Unlocking (SHERLOCK) based diagnostic platform for species-specific detection of oral bacterial and human pathogens papillomavirus (HPV) nucleic acids. The investigators developed a computer pipeline capable of generating guide RNAs and species-specific genetic primers suitable for SHERLOCK. These constructs were synthesized by cell-free biosynthesis systems, and their specificity and sensitivity were experimentally validated by fluorescence readings of reporter RNAs. The study detected oral bacteria in the single-molecule range that remained specific in the presence of non-targeted DNA found in saliva. In addition, the assay was refined to detect common oral pathogens (e.g. P. gingivalis, F. nucleatum) directly from untreated saliva samples. Detection results, when tested on 30 patient saliva samples, are perfectly aligned with those of other detection methods such as qPCR and 16S rRNA sequencing. This oral pathogen detection method is highly scalable and can be easily optimized for point-of-care implementation. Detection takes around 35 minutes or less, is extremely inexpensive and requires no special skills or techniques.

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Innovative CAR T cell therapy targets two proteins to combat aggressive brain tumor growth

Innovative CAR T cell therapy targets two proteins to combat aggressive brain tumor growth | Genetic Engineering in the Press by GEG | Scoop.it
Breakthrough in Brain Cancer Treatment: Dual-Target CAR T Cell Therapy Shows Promise in Early Clinical Trial.
BigField GEG Tech's insight:

Recurrent glioblastoma (rGBM) is an aggressive, treatment-resistant brain cancer with no conventional treatment options after chemoradiotherapy. Median overall survival (OS) is less than one year, indicating that effective treatment is an urgent unmet medical need in oncology. Despite limited therapeutic options, chimeric antigen receptor T cells targeting GBM-specific antigens have demonstrated tolerable safety but poor efficacy in adults. In the phase 1 clinical trial of a recent study, the use in cancer patients of intrathecally administered bivalent autologous chimeric antigen receptor (CAR) T lymphocytes targeting the epidermal growth factor receptor (EGFR) and interleukin-13 receptor alpha 2 (IL13Rα2) was associated with early neurotoxicity, possibly the immune effector-associated neurotoxicity syndrome (ICANS). All six patients showed reduction in tumor size and enhancement, but none met criteria for objective response rate. The researchers identified CAR-T cell abundance and cytokine release in all patients, and all developed neurotoxicity. 

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Key gene found to prevent muscle breakdown in muscular dystrophy

Key gene found to prevent muscle breakdown in muscular dystrophy | Genetic Engineering in the Press by GEG | Scoop.it
A specific gene may play a key role in new treatments that prevent muscle in the body from breaking down in serious muscle diseases, muscular dystrophies.
BigField GEG Tech's insight:

Muscular dystrophies are a group of congenital genetic diseases that affect muscle tissue, often resulting in severe disability and considerably reduced life expectancy. Despite intensive research, there is still no effective treatment for patients suffering from muscular dystrophy. It has already been discovered that the muscles that control eye movements are not affected by muscular dystrophy, even in otherwise serious disease processes. In people with muscular dystrophy, the muscles of the body atrophy, while the muscles of the eye remain strong despite the same genetic abnormality. A study has now shed light on this phenomenon. It turns out that a specific gene plays a key role. This gene, fhl2b, is expressed in eye muscles throughout life, but not in other muscles of the body. In the study, researchers used genetically modified zebrafish to investigate how muscular dystrophies affect eye muscles in relation to other muscles in the body. Using Crispr/Cas9 genetic scissors, new models of genetic diseases were created and used on zebrafish.

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Could AI-designed proteins be weaponized? Scientists lay out safety guidelines - Nature

Could AI-designed proteins be weaponized? Scientists lay out safety guidelines - Nature | Genetic Engineering in the Press by GEG | Scoop.it
AI tools that can come up with protein structures at the push of a button should be used safely and ethically, say researchers in the field.
BigField GEG Tech's insight:

Could proteins designed by artificial intelligence (AI) ever be used as bioweapons? In the hope of heading off this possibility — as well as the prospect of burdensome government regulation — researchers today launched an initiative calling for the safe and ethical use of protein design.

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New DNA recombination toolbox surpasses CRISPR for genome engineering

New DNA recombination toolbox surpasses CRISPR for genome engineering | Genetic Engineering in the Press by GEG | Scoop.it
Belgian researchers from VIB-KU Leuven Center for Microbiology and VIB-UGent Center for Plant Systems Biology have developed a new toolbox of 16 different short DNA sequences that allow triggering controlled and specific recombination events in any genome.
BigField GEG Tech's insight:

Belgian researchers from the VIB-KU Leuven Center for Microbiology and the VIB-UGent Center for Plant Systems Biology have extended the toolbox that uses a viral recombinase (Cre) so that it can now specifically recognize, cut and paste multiple DNA sites. The team has identified a set of 16 sites that recombine efficiently with the same site, but not with any other site in that set, for different organisms. This new patented toolbox, complementary to CRISPR, and for some applications going beyond it, is now available to researchers and industrialists in the field of genome engineering. The results are reported today in two simultaneous articles in the prestigious journal Nature Communications.

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FDA Grants Priority Review to Expand Liso-Cel Indications in R/R Follicular Lymphoma and MCL

FDA Grants Priority Review to Expand Liso-Cel Indications in R/R Follicular Lymphoma and MCL | Genetic Engineering in the Press by GEG | Scoop.it
Liso-cel sBLAs for indications in relapsed/refractory FL and MCL after exposure to a BTK inhibitor have received priority review from the FDA.
BigField GEG Tech's insight:

The FDA has granted priority review to 2 supplemental Biologics License Applications (sBLAs) for lisocabtagene maraleucel (Breyanzi) to expand to new indications to include adult patients with relapsed or refractory follicular lymphoma and relapsed or refractory mantle cell lymphoma (MCL) after exposure to a BTK Inhibitor. Japan's Ministry of Health, Labor and Welfare has also agreed to consider an additional new drug application seeking approval of liso-cel in patients with relapsed or refractory follicular lymphoma. The applications are supported by results from the Phase 2 TRANSCEND FL study (NCT04245839) and the MCL cohort of the Phase 1 TRANSCEND NHL 001 study (NCT02631044). Data from the primary analysis of TRANSCEND FL were shared for malignant lymphoma and showed that liso-cel induced an objective response rate (ORR) of 97% (95% CI, 91.6%-99.4%) and a complete response rate (CR) of 94% (95% CI, 87.5%-97.8%). The results of the primary analysis of the TRANSCEND NHL 001 MCL cohort were also shared. In the primary analysis set (n = 74), liso-cel generated an ORR of 86.5% (95% CI, 76.5%-93.3%) with a CR rate of 74.3% (95% CI, 62.8%-83.8%). 

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Genetically modified banana resistant to Panama disease given approval for Australian consumption - ABC News

Genetically modified banana resistant to Panama disease given approval for Australian consumption - ABC News | Genetic Engineering in the Press by GEG | Scoop.it


 

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Genetically modified cavendish bananas that are nearly immune to a devastating fungal disease have been given approval for commercial production and human consumption in Australia.

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News: Can CRISPR Cure HIV?

News: Can CRISPR Cure HIV? | Genetic Engineering in the Press by GEG | Scoop.it
Researchers at Universidade de São Paulo in Brazil review progress in recent years involving the use of gene editing to cure HIV and prevent associated neurocognitive disorders.
BigField GEG Tech's insight:

Human Immunodeficiency Virus (HIV) affects almost 40 million people worldwide, and remains incurable despite considerable efforts to develop new treatments since its discovery in the 1970s. Viral suppression is currently possible thanks to antiretroviral treatments, which can reduce the number of HIV particles in the blood to almost undetectable levels, thus preventing the virus from causing significant damage to patients' immune systems and preventing person-to-person transmission. However, despite the availability of effective antiretroviral treatment, some people living with HIV suffer from HIV-related neurocognitive disorders. These are collectively known as HAND, and have a considerable impact on quality of life. HAND occurs along a continuum of severity; the most severe form is known as HIV-associated dementia (HAD). The exact pathobiological mechanisms underlying HAND are poorly understood, but it is generally accepted that its progression correlates with HIV infection of several cell types in the brain, including astrocytes, microglial cells and macrophages. The emergence of a wide range of gene-editing tools in recent years offers opportunities to develop new, potentially curative therapies against HIV, including therapies aimed at preventing the development of HAND. 

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News: Prime- and base-editing mouse models advance cancer research

News: Prime- and base-editing mouse models advance cancer research | Genetic Engineering in the Press by GEG | Scoop.it
The cancer research landscape is transforming by introducing novel mouse models utilising prime- and base-editing techniques. Yesterday, a News & Views in Nature Biotechnology summarised the findings of two recent studies that carefully examine the role of specific genetic variants in cancer.
BigField GEG Tech's insight:

The landscape of cancer research is being transformed by the introduction of new mouse models using prime- and base-editing techniques. The prime-editing mouse model stands out for its high editing efficiencies, particularly in lung and pancreatic organoids. This model facilitates in-depth exploration of drug-resistance mutations, a critical aspect in cancer treatment. Similarly, the base-editing model demonstrates its prowess in creating high-throughput organoid-based models for studying complex genetic variations. The precision and efficiency of these models are crucial to understanding the mechanisms of cancer development and spread, and to identifying potential therapeutic targets.  These advances mark a new era in cancer research, where understanding the genetic underpinnings of cancer is becoming more accessible and actionable.

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CRISPR opens doors for novel probiotic functions and applications

CRISPR opens doors for novel probiotic functions and applications | Genetic Engineering in the Press by GEG | Scoop.it
Humans can benefit significantly from symbiotic relationships with probiotics-;live bacteria and microorganisms that influence the gut microbiota.
BigField GEG Tech's insight:

Probiotics, widely regarded as a treasure trove in the field of microbiology, are currently finding new applications in medicine, animal care and the food industry. However, it is often difficult to use probiotics in their existing form, due to the varying effects of different strains on the health of different individuals. Consequently, it is also difficult to find concrete evidence to support the proposed benefits of probiotics. Fortunately, these challenges can be overcome thanks to the considerable advances we've seen in genetic engineering over the past decade, particularly following the introduction of the hugely popular CRISPR-Cas editing system. By modifying, deleting or introducing specific genes with these tools, we can tailor the activities of probiotic organisms to our health needs. To support the researchers interested in pushing the limits of the field, Professor Nan Peng from the Huazhong Agricultural University, China, along with his colleagues, recently published a review article in Volume 5 of BioDesign Research summarizing the latest advances and hurdles related to the engineering of probiotics with CRISPR-Cas.

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