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This 7-year field experiment using the rice-wheat cropping system in Haryana, India looked at weed management issues in this system. Weed infestation was more intensified and diversified in direct seeded rice (DSR) than puddled transplanted rice (PTR), and even eliminating puddling in rice-induced more infestation of Phalaris minor in succeeding wheat crop. Residue retention in zero-till (ZT) DSR and rotating conventional till (CT) DSR with PTR reduced weed pressure compared to continuous DSR. Root knot and plant parasitic nematodes were less in DSR than PTR but reverse was true for saprozoic nematodes in DSR and ZT situations. There was also improvement in soil health under ZTDSR/MTR (higher OC, N, P and K, and lower bulk density) compared to PTR.