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Topical news snippets about viruses that affect people. And other things.
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Did wild birds cause the 2010 deadly West Nile virus outbreak in Greece? | Science Codex

Did wild birds cause the 2010 deadly West Nile virus outbreak in Greece? | Science Codex | Virology News | Scoop.it
In 2010, 35 people in Greece died from a West Nile virus (WNV) outbreak, with a further 262 laboratory-confirmed human cases.
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The Elusive H7N9 Virus: Chinese Researchers Predict Future Pandemic

The Elusive H7N9 Virus: Chinese Researchers Predict Future Pandemic | Virology News | Scoop.it
Since February 2013, China experienced an outbreak of the novel H7N9 avian flu, causing 131 cases of infection, and a death toll of 39.
Ed Rybicki's insight:

...and there's a vaccine for that.  A couple, in fact - one of them green.

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Hybrid DNA virus in Chinese patients with seronegative hepatitis discovered by deep sequencing

Hybrid DNA virus in Chinese patients with seronegative hepatitis discovered by deep sequencing | Virology News | Scoop.it

Seronegative hepatitis—non-A, non-B, non-C, non-D, non-E hepatitis—is poorly characterized but strongly associated with serious complications. We collected 92 sera specimens from patients with non-A–E hepatitis in Chongqing, China between 1999 and 2007. Ten sera pools were screened by Solexa deep sequencing. We discovered a 3,780-bp contig present in all 10 pools that yielded BLASTx E scores of 7e-05–0.008 against parvoviruses. The complete sequence of the in silico-assembled 3,780-bp contig was confirmed by gene amplification of overlapping regions over almost the entire genome, and the virus was provisionally designated NIH-CQV. Further analysis revealed that the contig was composed of two major ORFs. By protein BLAST, ORF1 and ORF2 were most homologous to the replication-associated protein of bat circovirus and the capsid protein of porcine parvovirus, respectively. Phylogenetic analysis indicated that NIH-CQV is located at the interface of Parvoviridae and Circoviridae. Prevalence of NIH-CQV in patients was determined by quantitative PCR. Sixty-three of 90 patient samples (70%) were positive, but all those from 45 healthy controls were negative. Average virus titer in the patient specimens was 1.05 e4 copies/µL. Specific antibodies against NIH-CQV were sought by immunoblotting. Eighty-four percent of patients were positive for IgG, and 31% were positive for IgM; in contrast, 78% of healthy controls were positive for IgG, but all were negative for IgM. Although more work is needed to determine the etiologic role of NIH-CQV in human disease, our data indicate that a parvovirus-like virus is highly prevalent in a cohort of patients with non-A–E hepatitis.

 Parvovirus virion courtesy of Russell Kightley Media

Ed Rybicki's insight:

There are stranger viruses on Earth, Horatio, than were dreamed of in your textbooks....

Seriously: a parvo-circovirus hybrid, with a linear ssDNA genome??  It makes sense, however, if you consider that both types of viruses replicate by what amounts to the same mechanism: namely, rolling-circle replication, with a virus-specific RCR initiator protein.  Aka Rep, in this case.  All that is needed for a Rep to release a genome from a replication intermediate is an corcovirus Ori sequence - which could be embedded in a parvovirus-like ITR.

Interesting stuff!  Time (and further investigation) will show if this thing is real.

I thank Stephen Korsman for pointing this paper out.

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In Memoriam - Hilary Koprowski

In Memoriam - Hilary Koprowski | Virology News | Scoop.it
Hilary Koprowski: A Renaissance scientist

Hilary Koprowski died on the 11th of April 2013 at the age of 96 from respiratory complications...
Ed Rybicki's insight:

I met him a few times - he endeared himself to me as he was one of the only people who knew how to pronounce my name without me telling him - and he was a MOST impressive man.  Productive to the end, and right into new technologies such as plant production as well.  We will miss him.

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xkcd: Cells

xkcd: Cells | Virology News | Scoop.it
Ed Rybicki's insight:

And for all you folk out there who get taken in by headlines such as "Rogue gene in maize kills mice!".

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Zombies—A Pop Culture Resource for Public Health Awareness

Zombies—A Pop Culture Resource for Public Health Awareness | Virology News | Scoop.it
Sitting at his laboratory bench, a scientist adds mutation after mutation to a strand of rabies virus RNA, unaware that in a few short days, an outbreak of this very mutation would destroy society as we know it.
Ed Rybicki's insight:

Love it!  Zombies for public health!  Russell, you'll like this.  Thanks, Stephen Korsmann.

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PLOS Pathogens: Plant Virus Ecology

PLOS Pathogens: Plant Virus Ecology | Virology News | Scoop.it

Viruses have generally been studied either as disease-causing infectious agents that have a negative impact on the host (most eukaryote-infecting viruses), or as tools for molecular biology (especially bacteria-infecting viruses, or phage). Virus ecology looks at the more complex issues of virus-host-environment interactions. For plant viruses this includes studies of plant virus biodiversity, including viruses sampled directly from plants and from a variety of other environments; how plant viruses impact species invasion; interactions between plants, viruses and insects; the large number of persistent viruses in plants that may have epigenetic effects; and viruses that provide a clear benefit to their plant hosts (mutualists). Plants in a non-agricultural setting interact with many other living entities such as animals, insects, and other plants, as well as their physical environment. Wild plants are almost always colonized by a number of microbes, including fungi, bacteria and viruses. Viruses may impact any of these interactions [1].

Ed Rybicki's insight:

Nice, reasoned review on something most human and animal virologists take no notice of whatsoever...B-)  OK, she does have "Plant Virus Biodiveristy" as her first heading, but hey, I misspelled my own name on my second paper when referring to my first!

 

The bottom line is that we notice plant viruses when they do things to our crop plants or companion plants - and not when they are in their natural (read: non-agricultural / horticultural) setting.  As Marilyn points out, plant viruses may interact with plant host, insect vector and humans - and with other pathogens and commensals and symbionts, making for a potentially VERY complex ecosystem.

 

Interestingly, "wild" plant viruses often cause persistent infections, and are efficiently transmitted vertically - and may even, as in the begomovirus-infected Abutilon, give rise to a pleasing phenotype that has resulted in spread, via cultivation, around the world.

 

The world needs more plant virologists.  It certainly has enough plant viruses!

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The end of H7N9? No new bird flu cases reported in over a week

The end of H7N9? No new bird flu cases reported in over a week | Virology News | Scoop.it
After months of mounting concern, Chinese health officials are breathing a sigh of relief: no new human cases of H7N9 have been reported in the country in more than a week. The milestone marks the... (RT @verge: The end of H7N9?
Ed Rybicki's insight:

One can hope!

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Viruses in the gut protect from infection

Viruses in the gut protect from infection | Virology News | Scoop.it
Phages in mucus aid immune system by killing invading bacteria.

...animal mucus — whether from humans, fish or corals — is loaded with bacteria-killing viruses called phages. These protect their hosts from infection by destroying incoming bacteria. In return, the phages are exposed to a steady torrent of microbes in which to reproduce.

Ed Rybicki's insight:

Amazing stuff - that animals can co-opt bacterial viruses as part of their innate immune systems!  Thanks to Joann Passmore for pointing this out.

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Billions of dollars later and still no Aids vaccine - Times LIVE

Billions of dollars later and still no Aids vaccine - Times LIVE | Virology News | Scoop.it
Latest news from South Africa, World, Politics, Entertainment and Lifestyle. The home of The Times and Sunday Times newspaper. (The hunt for an HIV vaccine has gobbled up $8-billion in the past decade with no real results.
Ed Rybicki's insight:

Beause of rampant band-wagon jumping and some ignoring of basic lessons from other lentiviruses...the Ad5 bandwagon was especially noticeable; it will be interesting to see what the new wagon will be, now that this has come to a grinding halt.  Poxviruses, anyone?

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Production of protective bluetongue virus-like particle vaccine in plants

Production of protective bluetongue virus-like particle vaccine in plants | Virology News | Scoop.it

Plant expression systems based on nonreplicating virus-based vectors can be used for the simultaneous expression of multiple genes within the same cell. They therefore have great potential for the production of heteromultimeric protein complexes. This work describes the efficient plant-based production and assembly of Bluetongue virus-like particles (VLPs), requiring the simultaneous expression of four distinct proteins in varying amounts. Such particles have the potential to serve as a safe and effective vaccine against Bluetongue virus (BTV), which causes high mortality rates in ruminants and thus has a severe effect on the livestock trade. Here, VLPs produced and assembled in Nicotiana benthamiana using the cowpea mosaic virus-based HyperTrans (CPMV-HT) and associated pEAQ plant transient expression vector system were shown to elicit a strong antibody response in sheep. Furthermore, they provided protective immunity against a challenge with a South African BTV-8 field isolate.

 

The results show that transient expression can be used to produce immunologically relevant complex heteromultimeric structures in plants in a matter of days. The results have implications beyond the realm of veterinary vaccines and could be applied to the production of VLPs for human use or the coexpression of multiple enzymes for the manipulation of metabolic pathways.

 Generic reovirus-like particle by Russell Kightley Media
Ed Rybicki's insight:

While this has not been subject to the same hype as the FMDV VLPs featured here and all over the media recently, it is at least as big a deal - and yes, we are involved, and yes, we are highly stoked with what we did.

 

Because this is a four-protein virus-like particle, expressed via transient expression in N benthamiana, and assembled in yields high enough to allow purification of particles that were protective in a live virus challenge experiment in sheep.

 

Yes, protective in actual sheep, and competitive with the standard attentuated live virus vaccine - which is a seriously big deal!

 

Plus the electron micrographs of the particles are SO cool.  Congratulations, Eva and team, you have done really, really well.

Frank Sainsbury's comment, May 17, 3:45 AM
Hear, hear!!
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Fears grow over deadly new virus

Fears grow over deadly new virus | Virology News | Scoop.it
The World Health Organization warns that it appears "increasingly" likely that the new coronavirus can be passed between people in close contact.
Ed Rybicki's insight:

Yet ANOTHER damn virus to worry about...B-(  Thanks, Ken Yaw Agyeman-Badu!

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New vaccines needed for pathogens infecting animals and humans: One Health – Dr. Thomas P. Monath

New vaccines needed for pathogens infecting animals and humans: One Health – Dr. Thomas P. Monath | Virology News | Scoop.it
World Vaccine Congress & Expo 2013 

Dr Thomas P. Monath, Adjunct Professor at Harvard School of Public Health gives his presentation on ‘New vaccines needed for pathogens infecting animals and humans: One Health’.

 

Ed Rybicki's insight:

This is a very interesting presentation for a number of reasons - prime among which is the fact that a number of very influential international organisations and funders are taking the notion of "One Health" very seriously.

 

That is, the development of reagents and vaccines that can be used for agents that cause both animal and human diseases, such as avian influenza, Nipah and Hendra and Rift Valley fever viruses, and so on.

 

Great idea - and one we are trying to address with making such things in plants!

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Cassava Viral Disease Spreads at Alarming Rate

Cassava Viral Disease Spreads at Alarming Rate | Virology News | Scoop.it

Scientists say a disease destroying entire crops of cassava has spread out of East Africa into the heart of the continent, is attacking plants as far south as Angola and now threatens to move west into Nigeria, the world's biggest producer of the potato-like root that helps feed 500 million Africans.


Photo: healthy cassava, Ed Rybicki, western Kenya, 1998


Ed Rybicki's insight:

This is a really big deal - and it comes just 15 years or so after another cassava scourge, caused by a recombinant begomovirus, swept out of Uganda.  That one was credited with helping to kill over 20 000 people, due to starvation and assocaited morbidity.  This one - Cassava brown streak virus, or CBSV - is a filamentous ssRNA potyvirus (genus Ipomovirus, family Potyviridae), spread by whiteflies ratehr than the usual potyvirus vector (aphids).

 

Gerhard Pietersen and I noted in 1999 that CBSV was an emerging virus, but not a serious problem (Adv Virus Res, 53, 127-175, 1999).


It has obviously emerged, and is.  Now to deal with it!

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Map: Vaccine-Preventable Outbreaks

Map: Vaccine-Preventable Outbreaks | Virology News | Scoop.it
The Global Health Program at the Council on Foreign Relations has been tracking news reports since 2008 to produce an interactive map that plots global outbreaks of diseases that are easily prevented by inexpensive and effective vaccines.
Ed Rybicki's insight:

BRILLIANT piece of work - and you kow, the UK comes over like some developing country, in terms of vaccine-preventable disease incidence?  Frightening!

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HIV and ‘hot spring’ virus hijack same protein

HIV and ‘hot spring’ virus hijack same protein | Virology News | Scoop.it

There’s a surprising connection between HIV, Ebola, and viruses that infect organisms called archaea that grow in volcanic hot springs.

 

The viruses hijack the same set of proteins to break out of infected cells, new research shows.

In eukaryotes—the group that includes plants and animals—and in archaea—tiny organisms with no defined nucleus in their cellular construction—viruses co-opt a group of important protein complexes known as ESCRT.

Ed Rybicki's insight:

Amazing stuff - shows the VERY deep evolutionary interconnectedness of viruses, eukarya and archaea.

I thank Arvind Varsani for pointing this article out.

Chris Upton + helpers's comment, June 17, 2:16 PM
Or coincidence... how many viruses on the planet in the last XX billion years (I should go read the paper)
Chris Upton + helpers's comment, June 17, 2:23 PM
A colleague used to say "If it's not impossible, it's compulsory" about these kind of things....
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What is needed for phage therapy to become a reality in Western medicine?

What is needed for phage therapy to become a reality in Western medicine? | Virology News | Scoop.it

The current status of phage therapy approaches is reviewed and possible hurdles to a practical medical application of bacteriophages in Western countries are identified as discussed at a recent EMBO meeting on “Viruses of Microbes” in Brussels. In view of the growing antibiotic resistance crisis, a coordinated effort by the public health sector is needed to evaluate the potential of phage therapy as an adjunct to antibiotics.

 T4 coliphage picture by Russell Kightley Media
Ed Rybicki's insight:

 

 I missed this first time around - but it is one of the most-downloaded papers from Virology, so probably well worth a read.Or getting into the field...?
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Vitamin C Slays TB Bacteria

Vitamin C Slays TB Bacteria | Virology News | Scoop.it
The essential nutrient can kill drug-resistant Mycobacterium tuberculosis by producing oxidative radicals that damage DNA.
Ed Rybicki's insight:

I was always a fan of Linus Pauling's "a gram of vitamin C a day keeps the doctor away!" philosophy - and now it appears there may be something to it.  Could killing TB REALLY be that simple??  Bill Jacobs, who led the study - certainly thinks so: we got a personal account of the work over dinner in Cape Town recently, and it was seriously exciting.

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Virophages, polintons, and transpovirons: a complex evolutionary network of diverse selfish genetic elements with different reproduction strategies

Virophages, polintons, and transpovirons: a complex evolutionary network of diverse selfish genetic elements with different reproduction strategies | Virology News | Scoop.it

The results of the phylogenomic analysis of the virophages and related genetic elements are compatible with the concept of network-like evolution of the virus world and emphasize multiple evolutionary connections between bona fide viruses and other classes of capsid-less mobile elements.

Altogether, virophages, polintons, a distinct Tetrahymena transposable element Tlr1, transpovirons, adenoviruses, and some bacteriophages form a network of evolutionary relationships that is held together by overlapping sets of shared genes and appears to represent a distinct module in the vast total network of viruses and mobile elements.


Via Chad Smithson
Ed Rybicki's insight:

Blow your MINDS, virologists...deep relationships between phages, human viruses, satellite viruses and big DNA viruses - as well as with diverse mobile elements within genomes.

Ignacio López-Goñi's curator insight, May 25, 3:50 AM

Apasionante: el tema se complica! 

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Synthetic Generation of Influenza Vaccine Viruses for Rapid Response to Pandemics

During the 2009 H1N1 influenza pandemic, vaccines for the virus became available in large quantities only after human infections peaked. To accelerate vaccine availability for future pandemics, we developed a synthetic approach that very rapidly generated vaccine viruses from sequence data. Beginning with hemagglutinin (HA) and neuraminidase (NA) gene sequences, we combined an enzymatic, cell-free gene assembly technique with enzymatic error correction to allow rapid, accurate gene synthesis. We then used these synthetic HA and NA genes to transfect Madin-Darby canine kidney (MDCK) cells that were qualified for vaccine manufacture with viral RNA expression constructs encoding HA and NA and plasmid DNAs encoding viral backbone genes. Viruses for use in vaccines were rescued from these MDCK cells. We performed this rescue with improved vaccine virus backbones, increasing the yield of the essential vaccine antigen, HA. Generation of synthetic vaccine seeds, together with more efficient vaccine release assays, would accelerate responses to influenza pandemics through a system of instantaneous electronic data exchange followed by real-time, geographically dispersed vaccine production.

 
Ed Rybicki's insight:

So let's be clear: they made the vaccine SEED in 4 days, NOT the vaccine!  One would still then have to scale up production in mammalian cells - which is not trivial.

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Deadly virus kills Tunisian man

Deadly virus kills Tunisian man | Virology News | Scoop.it
A man has died of the novel coronavirus (NCoV) in Tunisia, in what is believed to be the first such case in Africa.
Ed Rybicki's insight:

Oops...?

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The Secret Life of Viral Entry Glycoproteins

The Secret Life of Viral Entry Glycoproteins | Virology News | Scoop.it

Survival of infection with Ebola virus (EBOV) depends on the ability of the host to mount early and strong immune responses [1], [2]. However, given that EBOV cases are associated with 40%–90% human mortality, EBOV has developed intricate solutions to human immunological defenses. Enveloped viruses, like EBOV, must deposit their genetic material within a cell to ensure their propagation. The roles of viral envelope glycoproteins in mediating virus attachment to host cells and catalyzing the subsequent fusion of the viral and host plasma membranes have been well described (reviewed in [3]). Given the limited number of genes in EBOV and other viruses, it stands to reason that these conformationally labile glycoproteins are also involved in more than just the initial steps of a productive infection. There is strong evidence that viral entry glycoproteins (GP) are modulators of host antiviral defenses (Table 1). In this article, we discuss our current structural understanding of the functions of envelope entry glycoproteins in immune evasion using EBOV as our example.

 
Ed Rybicki's insight:

Nice review on a very interesting and important topic - and highlights how viral entry proteins double as immune evasion agents.

Chris Upton + helpers's comment, June 17, 4:11 PM
"EBOV has developed intricate solutions to human immunological defenses." Since ebola didn't evolve in humans, this must be accidental. Similar activities may exist in the natural host but not with such high mortality consequences.
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China H7N9 Joint Mission Report 2013 (WHO)

Ed Rybicki's insight:

An important document - because it lays out in detail just what a high-level team that went to China found during their travels.  And it is disturbing: the virus has 6 internal genes of H9N2, with the H7 HA and N9 NA - the first time the latter has been seen in humans.  I note that H9N2 keeps popping up in humans, but is not so nasty: the H7N9, however, is a low pathogenicity virus in chickens, but severe in humans.

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India announces development of $1 rotavirus vaccine

India announces development of $1 rotavirus vaccine | Virology News | Scoop.it

The Government of India’s Department of Biotechnology (DBT) and Bharat Biotech have announced the development of a rotavirus vaccine that will be sold at $1 per dose, once approved. Results from a Phase III clinical trial showed that the ROTAVAC® vaccine decreased the incidence of severe rotavirus diarrhoea by 56% during the first year of life, and the protection conferred by the vaccine also continued into the second year of life. The clinical trial enrolled 6,799 infants across three sites in India.


The vaccine’s development resulted from a unique partnership between Indian and international researchers, with partners including DBT, Bharat Biotech, the US National Institutes of Health (NIH), the US Centers for Disease Control and Prevention (CDC), Stanford University School of Medicine, and PATH.


Rotavirus graphic courtesy of Russell Kightley Media

Ed Rybicki's insight:

We need to do this here...!

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Potential for H3N2 influenza pandemic

Potential for H3N2 influenza pandemic | Virology News | Scoop.it

The 2009 swine-origin H1N1 influenza, though antigenically novel to the population at the time, was antigenically similar to the 1918 H1N1 pandemic influenza, and consequently was considered to be [ldquo]archived[rdquo] in the swine species before reemerging in humans. Given that the H3N2 is another subtype that currently circulates in the human population and is high on WHO pandemic preparedness list, we assessed the likelihood of reemergence of H3N2 from a non-human host. Using HA sequence features relevant to immune recognition, receptor binding and transmission we have identified several recent H3 strains in avian and swine that present hallmarks of a reemerging virus. IgG polyclonal raised in rabbit with recent seasonal vaccine H3 fail to recognize these swine H3 strains suggesting that existing vaccines may not be effective in protecting against these strains.


Vaccine strategies can mitigate risks associated with a potential H3N2 pandemic in humans.

Ed Rybicki's insight:

No-one think of H3N2...except, as it happens, these folk - who have shown quite convincingly that circulating strains of H3N2 in birds and pigs would be quite capable of avoiding vaccine-conferred immunity, and potentially of causing a pandemic, if they reassorted with human-infecting viruses.  

 

I can't help but feel that there are several ticking influenza pandemic time bombs out there...H5N1, H7N9, and now H3N2.

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The Lurker: How A Virus Hid In Our Genome For Six Million Years

The Lurker: How A Virus Hid In Our Genome For Six Million Years | Virology News | Scoop.it
In the mid-2000s, David Markovitz, a scientist at the University of Michigan, and his colleagues took a look at the blood of people infected with HIV. Human immunodeficiency viruses kill their host...
Ed Rybicki's insight:

Thanks to @AJCann for pointing this out.

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