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Virology and Bioinformatics from Virology.ca
Virus and bioinformatics articles with some microbiology and immunology thrown in for good measure
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Links to Recombinant Software Detection/Analysis Software

Welcome to the comprehensive list of recombination analysis software maintained by the Robertson Lab.

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The Elements of Bioinformatics

The Elements of Bioinformatics | Virology and Bioinformatics from Virology.ca | Scoop.it
An interactive periodic table of common bioinformatics tools and their alternatives.
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List of sequence alignment software - Wikipedia, the free encyclopedia

List of sequence alignment software - Wikipedia, the free encyclopedia | Virology and Bioinformatics from Virology.ca | Scoop.it

"This list of sequence alignment software is a compilation of software tools and web portals used in pairwise sequence alignment and multiple sequence alignment. See structural alignment software for structural alignment of proteins."


Via Mohamed Nadhir Djekidel
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DOOSS: A tool for visual analysis of data overlaid on secondary structures.

MOTIVATION: DOOSS (Data Overlaid On Secondary Structures) is a tool for visualising annotated secondary structures of large single-stranded nucleotide sequences (such as full-length virus genomes). The purpose of this tool is to assist investigators in evaluating the biological relevance of secondary structures within particular sequences.

AVAILABILITY: DOOSS is written in Java and is available from: http://dooss.computingforbiology.org CONTACT: michaelgolden0@gmail.com SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.

 

Darren, you chose that name deliberately...B-)

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The Elements of Bioinformatics | Eagle Genomics

The Elements of Bioinformatics | Eagle Genomics | Virology and Bioinformatics from Virology.ca | Scoop.it
After being exhibited in public for the first time at last week's Eagle symposium, we have decided to put the full-size PDF of our bioinformatics periodic...
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RDP home page

RDP home page | Virology and Bioinformatics from Virology.ca | Scoop.it

Recombination Detection Program (RDP)

RDP applies a number of recombination detection and analysis algorithms. It runs under Windows 95/98/NT/XP/VISTA/7. You may download:

the most up to date (but still unstable) version of the program (RDP4 Beta 4.14 including VB runtimes, accessory apps, LDHat lookup tables and a large 3Seq p-value lookup table)the full program (smaller download) (RDP3 Alpha 44 including VB runtimes, accesory apps & LDHat lookup tables)the full program (bigger download) (RDP3 Alpha 44 including VB runtimes, accesory apps, LDHat lookup tables and a large 3Seq p-value lookup table)a user manual

 

Screenshot courtesy of "Contagion" - which used it without credits

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