Virology and Bioi...
Follow
Find tag "bioinformatics"
49.2K views | +46 today
Virology and Bioinformatics from Virology.ca
Virus and bioinformatics articles with some microbiology and immunology thrown in for good measure
Your new post is loading...
Your new post is loading...
Scooped by Chris Upton + helpers
Scoop.it!

Ewan's Blog: bioinformatician at large: Scaling up bioinformatics training online

Ewan's Blog: bioinformatician at large: Scaling up bioinformatics training online | Virology and Bioinformatics from Virology.ca | Scoop.it
more...
No comment yet.
Rescooped by Chris Upton + helpers from Curiosopernatura
Scoop.it!

A Quick Guide to Genomics and Bioinformatics Training for Clinical and Public Audiences

A Quick Guide to Genomics and Bioinformatics Training for Clinical and Public Audiences | Virology and Bioinformatics from Virology.ca | Scoop.it
PLOS Computational Biology is an open-access (Guide to #Genomics and #Bioinformatics Training for Clinical and Public Audiences http://t.co/MYOavdN6af http://t.co/iQEp66A7rR)...

Via HaBIc, Alberto Goldoni
more...
No comment yet.
Scooped by Chris Upton + helpers
Scoop.it!

Bioinformatician's Pocket Reference !!

Bioinformatician's Pocket Reference !! | Virology and Bioinformatics from Virology.ca | Scoop.it
  It is amusing how brain of bioinformaticians work! Learning a new programming language for days feels so much of fun that making 5 minute discussion with neighbours (unless under special cir...
more...
No comment yet.
Scooped by Chris Upton + helpers
Scoop.it!

Bioinformatics Curriculum Guidelines: Toward a Definition of Core Competencies

Bioinformatics Curriculum Guidelines: Toward a Definition of Core Competencies | Virology and Bioinformatics from Virology.ca | Scoop.it
PLOS Computational Biology is an open-access
more...
No comment yet.
Scooped by Chris Upton + helpers
Scoop.it!

Links to Recombinant Software Detection/Analysis Software

Welcome to the comprehensive list of recombination analysis software maintained by the Robertson Lab.

more...
No comment yet.
Scooped by Chris Kelly
Scoop.it!

BMC Bioinformatics >> Computational genetic neuroanatomy of the developing mouse brain: dimensionality reduction, visualization, and clustering

The structured organization of cells in the brain plays a key role in its functional efficiency.
more...
No comment yet.
Scooped by Chris Upton + helpers
Scoop.it!

BMC Bioinformatics | Base calling for high-throughput short-read sequencing: dynamic programming solutions

Background Next-generation DNA sequencing platforms are capable of generating millions of reads in a matter of days at rapidly reducing costs.
more...
No comment yet.
Scooped by Chris Upton + helpers
Scoop.it!

BMC Bioinformatics | Abstract | GenePainter: a fast tool for aligning gene structures of eukaryotic protein families, visualizing the alignments and mapping gene structures onto protein structures

All sequenced eukaryotic genomes have been shown to possess at least a few introns. This includes those unicellular organisms, which were previously suspected to be intron-less.
more...
No comment yet.
Scooped by Chris Upton + helpers
Scoop.it!

Bioinformatics Software - SEQwiki

Bioinformatics Software - SEQwiki | Virology and Bioinformatics from Virology.ca | Scoop.it
Chris Upton + helpers's insight:

Always worth repeating....

more...
No comment yet.
Scooped by Chris Upton + helpers
Scoop.it!

Homolog.us: a Blog Guide

Homolog.us: a Blog Guide | Virology and Bioinformatics from Virology.ca | Scoop.it

 

Introductory Articles on Bioinformatics

A beginner’s guide to bioinformatics – part I
A beginner’s guide to bioinformatics – part II
Algorithms for Next-gen Sequence Analysis
Large Computer, Distributed Cluster or Amazon Cloud?
Must-have Tools for a Bioinformatician

Three Helpful Guides for Those Working on Genome Assembly

 

Plus many other topics...

more...
No comment yet.
Rescooped by Chris Upton + helpers from The Steep Slope of Bioinformatics!
Scoop.it!

Solving genome puzzles without a picture - Egghead

Solving genome puzzles without a picture - Egghead | Virology and Bioinformatics from Virology.ca | Scoop.it

Via Neelima Sinha
more...
No comment yet.
Scooped by Nicolas Palopoli
Scoop.it!

PLOS Computational Biology: The Roots of Bioinformatics in ISMB

PLOS Computational Biology: The Roots of Bioinformatics in ISMB | Virology and Bioinformatics from Virology.ca | Scoop.it
PLOS Computational Biology is an open-access
Nicolas Palopoli's insight:

Besides the interesting recall of the Intelligent Systems for Molecular Biology (ISMB) annual conferences on computational biology, it offers a nice insight into current state-of-the-art methodologies and upcoming trends in the discipline.

more...
No comment yet.
Scooped by Chris Upton + helpers
Scoop.it!

VideoStream for biocodershub

useful videos

more...
No comment yet.
Scooped by Chris Upton + helpers
Scoop.it!

Bioinformatics for Beginners!

Documenting my Experience Learning Bioinformatics from the Almost Begining
more...
No comment yet.
Scooped by Hannah Davis
Scoop.it!

BMC Bioinformatics | Full text | Metavir 2: new tools for viral metagenome comparison and assembled virome analysis

Metagenomics, based on culture-independent sequencing, is a well-fitted approach to provide insights into the composition, structure and dynamics of environmental viral communities. Following recent advances in sequencing technologies, new challenges arise for existing bioinformatic tools dedicated to viral metagenome (i.e. virome) analysis as (i) the number of viromes is rapidly growing and (ii) large genomic fragments can now be obtained by assembling the huge amount of sequence data generated for each metagenome.

 

The new features of Metavir 2 allow users to explore and analyze viromes composed of raw reads or assembled fragments through a set of adapted tools and a user-friendly interface.

 

http://metavir-meb.univ-bpclermont.fr/

more...
No comment yet.
Scooped by Chris Upton + helpers
Scoop.it!

TeselaGen Is Building A Platform For Rapid Prototyping in Synthetic Biology | TechCrunch

TeselaGen Is Building A Platform For Rapid Prototyping in Synthetic Biology | TechCrunch | Virology and Bioinformatics from Virology.ca | Scoop.it
As the costs of DNA sequencing and synthesis drop precipitously, a host of computer science-meets-biotech startups are cropping up in Silicon Valley...
more...
No comment yet.
Scooped by Chris Upton + helpers
Scoop.it!

BMC Bioinformatics | Abstract | Launching genomics into the cloud: deployment of Mercury, a next generation sequence analysis pipeline

Massively parallel DNA sequencing generates staggering amounts of data. Decreasing cost, increasing throughput, and improved annotation have expanded the diversity of genomics applications in research and clinical practice. This expanding scale creates analytical challenges: accommodating peak compute demand, coordinating secure access for multiple analysts, and sharing validated tools and results.
more...
No comment yet.
Scooped by Chris Upton + helpers
Scoop.it!

Crowdsourcing for bioinformatics

Crowdsourcing for bioinformatics | Virology and Bioinformatics from Virology.ca | Scoop.it
more...
No comment yet.
Scooped by Chris Kelly
Scoop.it!

BMC Bioinformatics >> Classification of protein motifs based on subcellular localization uncovers evolutionary relationships at both sequence and functional levels

Most proteins have evolved in specific cellular compartments that limit their functions and potential interactions.
more...
No comment yet.
Scooped by Chris Upton + helpers
Scoop.it!

BioJS: an open source JavaScript framework for biological data visualization

BioJS: an open source JavaScript framework for biological data visualization | Virology and Bioinformatics from Virology.ca | Scoop.it

Summary: BioJS is an open-source project whose main objective is the visualization of biological data in JavaScript. BioJS provides an easy-to-use consistent framework for bioinformatics application programmers. It follows a community-driven standard specification that includes a collection of components purposely designed to require a very simple configuration and installation. In addition to the programming framework, BioJS provides a centralized repository of components available for reutilization by the bioinformatics community.

more...
No comment yet.
Scooped by Chris Upton + helpers
Scoop.it!

Bioinformatics Knowledge Vital to Careers | The Scientist Magazine®

Bioinformatics is growing up. Science's hottest information tool is coming into adolescence and has transformed the way research is conducted.

more...
No comment yet.
Scooped by Chris Upton + helpers
Scoop.it!

DSK: k-mer counting with very low memory usage

DSK: k-mer counting with very low memory usage | Virology and Bioinformatics from Virology.ca | Scoop.it
Chris Upton + helpers's insight:

Summary: Counting all the k-mers (substrings of length k) in DNA/RNA sequencing reads is the preliminary step of many bioinformatics applications. However, state of the art k-mer counting methods require that a large data structure resides in memory. Such structure typically grows with the number of distinct k-mers to count.

more...
No comment yet.
Scooped by Chris Upton + helpers
Scoop.it!

NextGenSeek Stories This Week (10/1/13)

more...
No comment yet.
Scooped by Chris Upton + helpers
Scoop.it!

Google Scholar Metrics: Top publications - Bioinformatics & Computational Biology

more...
Chris Upton + helpers's comment, January 8, 2013 5:50 PM
handy way to find top papers from variety of journals
Scooped by Chris Upton + helpers
Scoop.it!

#Bioinformatics GAGE recipes: genome assembly

#Bioinformatics GAGE recipes: genome assembly | Virology and Bioinformatics from Virology.ca | Scoop.it
more...
No comment yet.