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The Steep Slope of Bioinformatics!
So much to learn, so little time
Curated by Neelima Sinha
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RNA-Skim: a rapid method for RNA-Seq quantification at transcript level

RNA-Skim: a rapid method for RNA-Seq quantification at transcript level | The Steep Slope of Bioinformatics! | Scoop.it
RNA-Skim: a rapid method for RNA-Seq quantification at transcript level http://t.co/WYOgDJHOGc #Bioinformatics #ź
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Beyond library size: a field guide to NGS normalization

Beyond library size: a field guide to NGS normalization | The Steep Slope of Bioinformatics! | Scoop.it
bioRxiv - the preprint server for biology, operated by Cold Spring Harbor Laboratory, a research and educational institution
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ChIP-Enrich: gene set enrichment testing for ChIP-seq data

ChIP-Enrich: gene set enrichment testing for ChIP-seq data | The Steep Slope of Bioinformatics! | Scoop.it
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I want to learn bioinformatics! A guide for complete beginners.

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[1302.2978] Phylogenetic analysis of gene expression

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Should be very useful for EvoDevo studies too
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Three Helpful Guides for Those Working on Genome Assembly « Homologus

Three Helpful Guides for Those Working on Genome Assembly « Homologus | The Steep Slope of Bioinformatics! | Scoop.it
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Bayesian Calculator

Simple applet for experimenting with different Bayesian scenarios to learn how Bayes' Theorem works.
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A Question on de Bruijn Graphs of Transcriptomes (RNA-seq) « Homologus

A Question on de Bruijn Graphs of Transcriptomes (RNA-seq) « Homologus | The Steep Slope of Bioinformatics! | Scoop.it
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BMC Bioinformatics | Abstract | Oculus: faster sequence alignment by streaming read compression

Despite significant advancement in alignment algorithms, the exponential growth of nucleotide sequencing throughput threatens to outpace bioinformatic analysis.
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Smith College: The Statistical Sleuth in R

Smith College: The Statistical Sleuth in R | The Steep Slope of Bioinformatics! | Scoop.it
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A Little Help from My Friends | The Scientist

A Little Help from My Friends | The Scientist | The Steep Slope of Bioinformatics! | Scoop.it
A Little Help from My Friends |...
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BMC Bioinformatics | Full text | Integrated biclustering of heterogeneous genome-wide datasets for the inference of global regulatory networks

The learning of global genetic regulatory networks from expression data is a severely under-constrained problem that is aided by reducing the dimensionality of the search space by means of clustering genes into putatively co-regulated groups, as...
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UCSF School of Medicine Leaders Explore Bioinformatics in Research, Patient Care and Education | www.ucsf.edu

UCSF School of Medicine Leaders Explore Bioinformatics in Research, Patient Care and Education | www.ucsf.edu | The Steep Slope of Bioinformatics! | Scoop.it
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Introduction to Python: Variables, Arithmetic and Lists

Introduction to Python: Variables, Arithmetic and Lists | The Steep Slope of Bioinformatics! | Scoop.it
Python Terminology and Syntax Variable-A variable is like a box storing a piece of data, giving a specific name to a value A variable can be a string or a number String-a string can contain letters...
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Clues from the resilient

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Motif analysis in RNA and DNA data

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If correlation doesn’t imply causation, then what does? | DDI

If correlation doesn’t imply causation, then what does? | DDI | The Steep Slope of Bioinformatics! | Scoop.it
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VAGUE: a graphical user interface for the Velvet assembler

VAGUE: a graphical user interface for the Velvet assembler | The Steep Slope of Bioinformatics! | Scoop.it
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Solving genome puzzles without a picture - Egghead

Solving genome puzzles without a picture - Egghead | The Steep Slope of Bioinformatics! | Scoop.it
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Dreams of 'Open' Everything

GitHub, a successful young company for open-source software projects, has $100 million in funding and a long-term dream of taking its approach outside engineering and into all business, even government.
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Scaffolding low quality genomes using orthologous protein sequences

Scaffolding low quality genomes using orthologous protein sequences | The Steep Slope of Bioinformatics! | Scoop.it
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PLOS Computational Biology: A Quick Guide to Organizing Computational Biology Projects

PLOS Computational Biology: A Quick Guide to Organizing Computational Biology Projects | The Steep Slope of Bioinformatics! | Scoop.it
PLOS Computational Biology is an open-access...
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Sequencing low diversity libraries on Illumina MiSeq

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Data and visualization blogs worth following

Data and visualization blogs worth following | The Steep Slope of Bioinformatics! | Scoop.it
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A workflow for genome-wide mapping of archaeal transcription factors with ChIP-seq

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