"If you had a big dataset that you prepped into a trimmed nearest neighbors graph, keep in mind that visualizing it in Gephi is just for fun. It’s not necessary for actual insight regardless of what the scads of presentations of tweets-spreading-as-visualized-in-Gephi might tell you (gag me). You just need to do the community detection piece. You can use Gephi for that or the libraries it uses. R and python both have a package called igraph that does this stuff too. Whatever you use, you just need to get community assignments out of your large dataset so that you can run things like the aggregate analysis over them to bubble up intelligence about each group."
Protein-protein interactions (PPIs) play fundamental roles in nearly all biological processes. The systematic analysis of PPI networks can enable a great understanding of cellular organization, processes and function.
The contributions span a wide range of topics, including computational genomics and genetics, protein function and computational proteomics, the transcriptome, structural bioinformatics, microarray data analysis, motif ...
Emerging technology of multimedia data mining for mobile applications. * Emergent semantics analysis and topic detection from inter-related multimedia objects. * Social-based business leveraging multimedia (e.g., social graph mining, social ...
"Bacteria sometimes commit suicide for the good of the group. When a virus infects a bacterium, the cell kills itself rather than allow the virus to replicate inside it and spread to the surrounding bacteria. The way this works is that when viruses aren’t around, the bacteria manufacture both a bacterial cyanide pill—a toxin molecule they could use to wipe themselves out if they come under attack—and an antitoxin molecule that keeps the toxin in check. When a virus infects the bacterium, the toxin is released, kills the bacterial cell, and prevents the virus from spreading to other cells. It’s bad for the individual bacterial cell but good for the community—and certainly bad for the infecting virus. Now researchers have found a virus that manipulates this mechanism for its own means, saving itself by keeping its host bacteria from cellular suicide."
Managing and Mining Graph Data is a comprehensive survey book in graph data analytics. It contains extensive surveys on important graph topics such as graph languages, indexing, clustering, data generation, pattern ...
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