Sir David Baulcombe is one of the world's top scientists whose work identified small RNAs, and he's a nice person as well. He will be a Kenote Speaker at the upcoming UK Plant Sciences Federation meeting in Dundee, Scotland, April 2013, which is sure to be a stimulating meeting http://www.plantsci2013.org.uk/programme/
RT-qPCR is a sensitive and increasingly used method for gene expression quantification. To normalize RT-qPCR measurements between samples, most laboratories use endogenous reference genes as internal controls.
During my PhD I have worked with Phytophthora species, which are very aggressive microorganisms that infect plants, causing huge economic and environmental losses. Commonly Phytophthora species spread and infect plants via zoospores, a motile asexual structure that uses a flagelum for locomotion. The zoospores can "sense" and swim towards plants signals starting an infection.
In this video I tested the attraction of P. plurivora zoospores to root exudates of European beech. The major decline of beech trees in forests worldwide has been associated with P. plurivora-caused disease. In the video you see a microscopy view of two pipette tips filled with water or root exudates. The pipettes were embedded in a zoospores suspension. Clearly the zoospores were more attracted to the root exudates than water.
Brassinosteroids (BRs) are a group of phytohormones that regulate various biological processes in plants. Interactions and crosstalk between BRs and other plant hormones control a broad spectrum of physiological and developmental processes. In this review, we examine recent findings which indicate that BR signaling components mainly interact with the signaling elements of other hormones at the transcriptional level. Our major challenge is to understand how BR signaling independently, or in conjunction with other hormones, controls different BR-regulated activities. The application of a range of biotechnological strategies based on the modulation of BR content and its interplay with other plant growth regulators (PGRs) could provide a unique tool for the genetic improvement of crop productivity in a sustainable manner.
Many destructive diseases of plants and animals are caused by oomycetes, a group of eukaryotic pathogens important to agricultural, ornamental, and natural ecosystems. Understanding the mechanisms underlying oomycete virulence and the genomic processes by which those mechanisms rapidly evolve is essential to developing effective long-term control measures for oomycete diseases. Several common mechanisms underlying oomycete virulence, including protein toxins and cell-entering effectors, have emerged from comparing oomycetes with different genome characteristics, parasitic lifestyles, and host ranges. Oomycete genomes display a strongly bipartite organization in which conserved housekeeping genes are concentrated in syntenic gene-rich blocks, whereas virulence genes are dispersed into highly dynamic, repeat-rich regions. There is also evidence that key virulence genes have been acquired by horizontal transfer from other eukaryotic and prokaryotic species.
It is generally correct to think of plants as the hearty autotrophs, gamely harnessing photons to make food and existing perennially (or annually) at the bottom of the food chain. However, thousands of plant species have lost the ability to feed themselves and have become adapted, instead, to live as parasites of other plants. Not surprisingly, these parasitic plants, especially witchweed root parasites such as Striga and Orobanche, have become major agricultural problems, causing substantial agricultural losses in regions where resources such as water are limited. Parasitic plants grow penetrating structures called haustoria, which connect to the vasculature of the host, allowing them to take water and nutrients from the host plant.
Removing a parasite is a not so simple matter of finding a treatment that will kill the parasite, but not the host. When both host and parasite are plants, the matter becomes increasingly complicated (reviewed in Rispail et al., 2007). Agronomic practices such as crop rotation and selective herbicides have proved to be of limited usefulness. Moreover, genetic resistance for resistance to parasitic plants has been difficult to find and has only proven successful in a few instances, although transgenic and marker-assisted selection strategies may provide more success. These complications show that novel strategies will be required to control these damaging parasites.
Macromolecules can be transferred from host to parasite; for example, RNA interference (RNAi) has been proposed, and explored with limited success, as one potential mechanism to control plant parasites (reviewed in Yoder et al., 2009). Alakonya et al. http://www.plantcell.org/content/24/7/3153 use the broad host-range parasitic plant dodder (Cuscuta pentagona) and the host plant tobacco (Nicotiana tabacum) to test an RNAi strategy.
Here's a collection of articles about roots - everything from evolution and development to interactions with the soil microbiota, stress communcation via root systems, and an examination of why shallow-rooted plants have highly restricted distributions.
All organisms run the gauntlet of Darwinian selection. Poignant examples include microbial pathogens, which must survive and thrive in their hosts. The process of pathogen adaptation to the host is diverse and is now known to involve a panoply of diversity generators, such as sexual/parasexual reproduction, aneuploidy, prions, mutators, telomeric silencing/recombination, and Hsp90 as a capacitor for evolution. Given the vast diversity of known mechanisms that can generate phenotypic and genotypic assortments, others likely remain to be discovered.
Fungal diseases of plants represent one of the most eminent threats to agriculture. Given the food needs of a growing world population and that more and more crops are devoted to fuel production, the necessity to develop crops with better resistance to disease is increasing. To accomplish this, the mechanisms that plant pathogenic fungi use to colonize plants need to be elucidated. As of now, there are only few examples/models in which this can be done on a functional, genome-wide level, taking into account both the pathogen and its host plant. The fungus Ustilago maydis (U. maydis) is one of these examples. It is a member of the smut fungi: a large group of parasites infecting mostly grasses, including several important crop plants such as maize (Figure 1B), wheat, barley, and sugar cane. Smut fungi are biotrophs, i.e., parasites that need the living host plant to complete their sexual life cycle. They do not establish prominent feeding structures like the related, haustoria-forming rust fungi. During penetration, the host plasma membrane invaginates and completely encases the intracellular hyphae (Figure 1A), establishing an extended interaction zone mediating the exchange of molecules between fungus and host. In contrast to most smut fungi that cause a systemic infection, remaining symptomless until the plant flowers, U. maydis can infect all above-ground parts of the maize plant but fails to spread systemically. U. maydis induces local tumors in which spores develop (Figure 1B) – a unique feature that allows detection of symptoms in corn seedlings less than a week after syringe infection with high levels of inoculum. This, together with the toolbox developed for reverse genetics, cell biology, and functional studies, has contributed to its status as a model for biotrophic basidiomycete fungi. Here the current level of our understanding of the elaborate molecular crosstalk between U. maydis and its host plant will be discussed.
• Root-knot nematodes (RKNs) are obligate endoparasites that maintain a biotrophic relationship with their hosts over a period of several weeks and induce the differentiation of root cells into specialized feeding cells. Nematode effectors synthesized in the oesophageal glands and injected into the plant tissue through the syringe-like stylet certainly play a central role in these processes. • In a search for nematode effectors, we used comparative genomics on expressed sequence tag (EST) datasets to identify Meloidogyne incognita genes encoding proteins potentially secreted upon the early steps of infection. • We identified three genes specifically expressed in the oesophageal glands of parasitic juveniles that encode predicted secreted proteins. One of these genes, Mi-EFF1 is a pioneer gene that has no similarity in databases and a predicted nuclear localization signal. We demonstrate that RKNs secrete Mi-EFF1 within the feeding site and show Mi-EFF1 targeting to the nuclei of the feeding cells. • RKNs were previously shown to secrete proteins in the apoplasm of infected tissues. Our results show that nematodes sedentarily established at the feeding site also deliver proteins within plant cells through their stylet. The protein Mi-EFF1 injected within the feeding cells is targeted at the nuclei where it may manipulate nuclear functions of the host cell.
Pest and pathogen losses jeopardise global food security and ever since the 19th century Irish famine, potato late blight has exemplified this threat. The causal oomycete pathogen, Phytophthora infestans, undergoes major population shifts in agricultural systems via the successive emergence and migration of asexual lineages. The phenotypic and genotypic bases of these selective sweeps are largely unknown but management strategies need to adapt to reflect the changing pathogen population. Here, we used molecular markers to document the emergence of a lineage, termed 13_A2, in the European P. infestans population, and its rapid displacement of other lineages to exceed 75% of the pathogen population across Great Britain in less than three years. We show that isolates of the 13_A2 lineage are among the most aggressive on cultivated potatoes, outcompete other aggressive lineages in the field, and overcome previously effective forms of plant host resistance. Genome analyses of a 13_A2 isolate revealed extensive genetic and expression polymorphisms particularly in effector genes. Copy number variations, gene gains and losses, amino-acid replacements and changes in expression patterns of disease effector genes within the 13_A2 isolate likely contribute to enhanced virulence and aggressiveness to drive this population displacement. Importantly, 13_A2 isolates carry intact and in planta induced Avrblb1, Avrblb2 and Avrvnt1 effector genes that trigger resistance in potato lines carrying the corresponding R immune receptor genes Rpi-blb1, Rpi-blb2, and Rpi-vnt1.1. These findings point towards a strategy for deploying genetic resistance to mitigate the impact of the 13_A2 lineage and illustrate how pathogen population monitoring, combined with genome analysis, informs the management of devastating disease epidemics.
The translocation mechanism of RxLR effectors from plant pathogenic oomycetes into the cytoplasm of their host is currently the object of intense research activity and debate. Here we report the biochemical and thermodynamic characterisation of the Phytophthora infestans effector AVR3a in vitro. We show that the amino acids surrounding the RxLR leader mediate homodimerisation of the protein. Dimerisation was considerably attenuated by a localised mutation within the RxLR motif that was previously described to prevent translocation of the protein into host. Importantly, we confirm that the reported phospholipid binding properties of AVR3a are mediated by its C-terminal effector domain, and not its RxLR leader. However, we show that the observed phospholipid interaction is attributable to a weak association with small amounts of denatured protein, and is therefore most likely physiologically irrelevant.
To suppress plant defense responses and favor the establishment of disease, phytopathogenic bacteria have gained the ability to deliver effector molecules inside host cells through the type III secretion system. Inside plant cells, bacterial effector proteins may be addressed to different subcellular compartments where they are able to manipulate a variety of host cellular components and molecular functions. Here we review how the recent identification and functional characterization of plant components targeted by bacterial effectors, as well as the discovery of new pathogen recognition capabilities evolved in turn by plant cells, have significantly contributed to further our knowledge about the intricate molecular interactions that are established between plants and their invading bacteria.
Plants evoke innate immunity against microbial challenges upon recognition of pathogen-associated molecular patterns (PAMPs), such as fungal cell wall chitin. Nevertheless, pathogens may circumvent the host PAMP-triggered immunity. We previously reported that the ascomycete Magnaporthe oryzae, a famine-causing rice pathogen, masks cell wall surfaces with α-1,3-glucan during invasion. Here, we show that the surface α-1,3-glucan is indispensable for the successful infection of the fungus by interfering with the plant's defense mechanisms. The α-1,3-glucan synthase gene MgAGS1 was not essential for infectious structure development but was required for infection in M. oryzae. Lack or degradation of surface α-1,3-glucan increased fungal susceptibility towards chitinase, suggesting the protective role of α-1,3-glucan against plants' antifungal enzymes during infection. Furthermore, rice plants secreting bacterial α-1,3-glucanase (AGL-rice) showed strong resistance not only to M. oryzae but also to the phylogenetically distant ascomycete Cochlioborus miyabeanus and the polyphagous basidiomycete Rhizoctonia solani; the histocytochemical analysis of the latter two revealed that α-1,3-glucan also concealed cell wall chitin in an infection-specific manner. Treatment with α-1,3-glucanase in vitro caused fragmentation of infectious hyphae in R. solani but not in M. oryzae or C. miyabeanus, indicating that α-1,3-glucan is also involved in maintaining infectious structures in some fungi. Importantly, rapid defense responses were evoked (a few hours after inoculation) in the AGL-rice inoculated with M. oryzae, C. miyabeanus and R. solani as well as in non-transgenic rice inoculated with the ags1 mutant. Taken together, our results suggest that α-1,3-glucan protected the fungal cell wall from degradative enzymes secreted by plants even from the pre-penetration stage and interfered with the release of PAMPs to delay innate immune defense responses. Because α-1,3-glucan is nondegradable in plants, it is reasonable that many fungal plant pathogens utilize α-1,3-glucan in the innate immune evasion mechanism and some in maintaining the structures.
This is from Plant Physiology in May (OA) and it's very interesting. I like the fact that it uses a cool, high-tech appraoch to address a pretty fundmental question about how things move in plants - it's a good one for students.