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Plant Genomics
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Plant enzymes reveal complex secrets

Plant enzymes reveal complex secrets | Plant Genomics | Scoop.it
“Just as the genome contains information about all of the plant's genes, the proteome and transcriptome contain information about protein and gene expression, respectively, whereas the metabolome signifies metabolites, ...
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Reactive oxygen species-driven transcription in ... - Plant Physiology

Reactive oxygen species-driven transcription in ... - Plant Physiology | Plant Genomics | Scoop.it
In this work, we used publicly available Arabidopsis thaliana microarray datasets related to ROS and O2 deprivation to define transcriptome convergence pattern. Our results show that although Arabidopsis response to anoxic ...
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Trinity Assembly, Isoforms vs. Paralogs? - SEQanswers

I am in the midst of going through a denovo non-model plant transcriptome assembly using Trintiy. I have so far been unable to find references on strategies for differentiating between very similar parologus genes and ...
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CLC genomics server for assembling large genomes - SEQanswers

I know some of my colleagues have had some success with the "CLCBio Assembly Cell" (or whatever their command line assembly tool is called) with plant genomes. Success meaning getting any useful contigs from a de novo assemblies, ...
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Genome-Builder Software Module: Sequence Assembly and Applications for Large genomes

The New Genome-Builder Software Module enables faster, more complete assembly for large genome de novo sequencing projects.
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Analyzing complex plant genomes with the newest next-generation DNA sequencing ... - Biology News Net (press release)

Analyzing complex plant genomes with the newest next-generation DNA sequencing ...Biology News Net (press release)Genomes are catalogs of hereditary information that determine whether an organism becomes a plant, animal, fungus or microbe, and...
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Gen - X ideas on IP: Plant Genome Savior Community Award

Gen - X ideas on IP: Plant Genome Savior Community Award | Plant Genomics | Scoop.it
India has enacted the Protection of Plant Varieties and Farmers' Rights Act in 2001 for the protection of plant varieties, the rights of farmers and plant breeders and to encourage the development of new plant varieties.
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PLoS ONE: Comparative Transcriptome Analysis of the Necrotrophic Fungus Ascochyta rabiei during Oxidative Stress: Insight for Fungal Survival in the Host Plant

PLoS ONE: Comparative Transcriptome Analysis of the Necrotrophic Fungus Ascochyta rabiei during Oxidative Stress: Insight for Fungal Survival in the Host Plant | Plant Genomics | Scoop.it
PLoS ONE: an inclusive, peer-reviewed, open-access resource from the PUBLIC LIBRARY OF SCIENCE. Reports of well-performed scientific studies from all disciplines freely available to the whole world.
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Analyzing complex plant genomes with the newest next-generation DNA sequencing techniques

Analyzing complex plant genomes with the newest next-generation DNA sequencing techniques | Plant Genomics | Scoop.it
Genomes are catalogs of hereditary information that determine whether an organism becomes a plant, animal, fungus or microbe, and whether the organism is adapted to its surroundings.
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Chinese scientists sequence sweet orange genome - Zee News

Chinese scientists sequence sweet orange genome - Zee News | Plant Genomics | Scoop.it
Zee NewsChinese scientists sequence sweet orange genomeZee NewsAfter a year's effort, a team of horticulture, genomics and bioinformatics experts from Central China Agricultural University in Wuhan successfully assembled and annotated the genome sequence...
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IsoLasso: a LASSO regression approach to RNA-S... [J Comput Biol. 2011] - PubMed - NCBI

PubMed comprises more than 21 million citations for biomedical literature from MEDLINE, life science journals, and online books. Citations may include links to full-text content from PubMed Central and publisher web sites.
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PLoS ONE: Maize (Zea mays L.) Genome Diversity as Revealed by RNA-Sequencing

PLoS ONE: Maize (Zea mays L.) Genome Diversity as Revealed by RNA-Sequencing | Plant Genomics | Scoop.it
PLoS ONE: an inclusive, peer-reviewed, open-access resource from the PUBLIC LIBRARY OF SCIENCE. Reports of well-performed scientific studies from all disciplines freely available to the whole world.
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Amazon.com: Organelles, Genomes and Eukaryote Phylogeny: An Evolutionary Synthesis in the Age of Genomics (Systematics Association Special Volumes) eBook: David S. Horner, Robert P Hirt: Kindle Store

Amazon.com: Organelles, Genomes and Eukaryote Phylogeny: An Evolutionary Synthesis in the Age of Genomics (Systematics Association Special Volumes) eBook: David S.
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The Plant Transcriptome and Its Response to Environmental Stimuli ...

Title, The Plant Transcriptome and Its Response to Environmental Stimuli. Abstract. The relationship between an organisms genome, developmental stage, and environment is complex. The aim of the research presented ...
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qTeller: an easier way to find candidate genes – James and the ...

qTeller: an easier way to find candidate genes – James and the ... | Plant Genomics | Scoop.it
The Plant Cell doi:10.1105/tpc.111.092668. Davidson RM, Hansey CN, Gowda M, Childs KL, Lin H, et. al. (2011) Utility of RNA Sequencing for Analysis of Maize Reproductive Transcriptomes. The Plant Genome4:191-203 ...
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Life Technologies Launches GeneArt® Precision TALs - MarketWatch (press release)

Life Technologies Launches GeneArt® Precision TALsMarketWatch (press release)TAL effectors were originally discovered in bacteria that infect plants, where they target specific DNA sequences in the plant genome, rewiring gene expression to...
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GeneArt® Precision TALs :Algae Industry Magazine

GeneArt® Precision TALs :Algae Industry Magazine | Plant Genomics | Scoop.it
TAL effectors were originally discovered in bacteria that infect plants, where they target specific DNA sequences in the plant genome, rewiring gene expression to establish and propagate infection. The simple TAL effector ...
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Analyzing complex plant genomes with the newest next-generation ...

Genomes are catalogs of hereditary information that determine whether an organism becomes a plant, animal, fungus or microbe, and whether the organism is adapted to its surroundings. Determining the sequence of DNA ...
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Life at the extreme: lessons from the genome

Life at the extreme: lessons from the genome. Oh DH, Dassanayake M, Bohnert HJ and Cheeseman JM. Genome Biology 2012, 13:241 (6 March 2012). Access to the PDF and full text of this article requires a subscription Help (the abstract is ...
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TEDxYouth@ValVerde - Dr. Susan Wessler - Plant Genomes

UNIVERSITY OF CALIFORNIA AT RIVERSIDE (UCR) -Distinguished Professor of Genetics - Susan Wessler is the University of California President's ...youtube.com...
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This Week in PLoS - In Sequence (blog)

This Week in PLoS - In Sequence (blog) | Plant Genomics | Scoop.it
This Week in PLoSIn Sequence (blog)Filiault and Maloof describe variants that underlie the shade-avoidance response in the plant.
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Genome duplication in higher plants

Genome duplication in higher plants | Plant Genomics | Scoop.it
Genome is the complete set of nuclear DNA of an organism, which includes both thegenesand thenon-coding sequencesof the DNA.
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Amazon.com: Concepts in Plant Metabolomics eBook: B.J. Nikolau, Eve Syrkin Wurtele: Kindle Store

Amazon.com: Concepts in Plant Metabolomics eBook: B.J.
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ScienceDirect.com - Journal of Genetics and Genomics - Small RNA transcriptome investigation based on next-generation sequencing technology

Small #RNA #transcriptome investigation based on next-generation sequencing technology http://t.co/FhFgcXnO #bioinformatics...
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Plants' 'spring switch' revealed

Plants' 'spring switch' revealed | Plant Genomics | Scoop.it
Researchers have identified the genetic "switch" that triggers the flowering process in plants as they respond to warmer temperatures. (Welcome to the world, little gene.
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