Plant Genomics
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A Maize Pan-Transcriptome | BioTranslator

A Maize Pan-Transcriptome | BioTranslator | Plant Genomics | Scoop.it
Genome-wide atlas of transcription during maize development. Plant J 66(4):553-63 (2011). 5. Davidson, R. M. et al. Utility of RNA sequencing for analysis of maize reproductive transcriptomes. Plant Genome 4, 191–203 ...
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First insights into the transcriptome and devel...

First insights into the transcriptome and devel... | Plant Genomics | Scoop.it
Aleppo pine (Pinus halepensis Mill.) is a relevant conifer species for studying adaptive responses to drought and fire regimes in the Mediterranean region.
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Data from: Transcriptome resources for the perennial sunflower ...

Data from: Transcriptome resources for the perennial sunflower ... | Plant Genomics | Scoop.it
Kawakami T, Darby BJ, Ungerer MC (2014) Transcriptome resources for the perennial sunflower Helianthus maximiliani obtained from ecologically divergent populations. Molecular Ecology Resources, online in advance of ...
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Data from: De novo assembly and characterization of the transcriptome of the parasitic weed Cuscuta pentagona identifies genes associated with plant parasitism - Dryad

Data from: De novo assembly and characterization of the transcriptome of the parasitic weed Cuscuta pentagona identifies genes associated with plant parasitism - Dryad | Plant Genomics | Scoop.it
Data from: De novo assembly and characterization of the transcriptome of the parasitic weed Cuscuta pentagona ... http://t.co/14XU0vGFN6
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UV-C–Irradiated Arabidopsis and Tobacco Emit Volatiles That Trigger Genomic Instability in Neighboring Plants

UV-C–Irradiated Arabidopsis and Tobacco Emit Volatiles That Trigger Genomic Instability in Neighboring Plants | Plant Genomics | Scoop.it
http://t.co/eh2OiS6ZKa UVC–Irradiated nonGM plant volatiles trigger genomic instability - isn't instability a reason why #GMOs called bad?
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Proteomic Profiling of Cytosolic Glutathione ...

Proteomic Profiling of Cytosolic Glutathione ... | Plant Genomics | Scoop.it
GSTs were purified by glutathione-agarose affinity chromatography, and the collection of expressed cGST classes of each bivalve were identified using a proteomic approach. All the purified extracts were also characterized ...
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The genome of the recently domesticated crop plant sugar beet (Beta vulgaris) : Nature : Nature Publishing Group

The genome of the recently domesticated crop plant sugar beet (Beta vulgaris) : Nature : Nature Publishing Group | Plant Genomics | Scoop.it
Sugar beet (Beta vulgaris ssp. vulgaris) is an important crop of temperate climates which provides nearly 30% of the world/'s annual sugar production and is a source for bioethanol and animal feed.
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BMC Genomics: Genome characteristics reveal the...

BMC Genomics: Genome characteristics reveal the... | Plant Genomics | Scoop.it
Background - Lichen is a classic mutualistic organism and the lichenization is one of the fungal symbioses.
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Parallel comparison of Illumina RNA-Seq and Affymetrix microarray platforms on transcriptomic profiles | RNA-Seq Blog

Parallel comparison of Illumina RNA-Seq and Affymetrix microarray platforms on transcriptomic profiles | RNA-Seq Blog | Plant Genomics | Scoop.it
High throughput parallel sequencing, RNA-Seq, has recently emerged as an appealing alternative to microarray in identifying differentially expressed genes (DEG) (RT @Mondongho: Parallel comparison of Illumina #RNASeq and Affymetrix platforms on transcriptomic...
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Large-scale deep re-sequencing reveals cucumber's evolutionary enigma - YottaFire

Large-scale deep re-sequencing reveals cucumber's evolutionary enigma YottaFire In 2009, cucumber became the seventh plant to have its genome sequence published, following the well-studied model plant Arabidopsis thaliana, the poplar tree,...
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The Amborella Genome and the Evolution of Flowering Plants

Biswapriya Biswavas Misra's insight:

Amborella trichopoda is strongly supported as the single living species of the sister lineage to all other extant flowering plants, providing a unique reference for inferring the genome content and structure of the most recent common ancestor (MRCA) of living angiosperms. Sequencing the Amborella genome, we identified an ancient genome duplication predating angiosperm diversification, without evidence of subsequent, lineage-specific genome duplications. Comparisons between Amborella and other angiosperms facilitated reconstruction of the ancestral angiosperm gene content and gene order in the MRCA of core eudicots. We identify new gene families, gene duplications, and floral protein-protein interactions that first appeared in the ancestral angiosperm. Transposable elements in Amborella are ancient and highly divergent, with no recent transposon radiations. Population genomic analysis across Amborella’s native range in New Caledonia reveals a recent genetic bottleneck and geographic structure with conservation implications.

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Oqtans: The RNA-seq Workbench in the Cloud for Complete and Reproducible Quantitative Transcriptome Analysis

Oqtans: The RNA-seq Workbench in the Cloud for Complete and Reproducible Quantitative Transcriptome Analysis | Plant Genomics | Scoop.it
Oqtans: The RNA-seq Workbench in the Cloud for Complete and Reproducible Quantitative Transcriptome Analysis. http://t.co/txxMCYtKEe
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Unpublished genomic data: how to share?

The field of genomics is often cited as the branch of biology that has led the way in data sharing.
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Abstract

The field of genomics is often cited as the branch of biology that has led the way in data sharing. In most cases, sequencing data are made publicly available immediately after generation and often before the data generators have completed their analyses. Although the pros of such openness cannot be denied, problems can arise when unpublished genomic data are shared. In this editorial we touch on these issues and discuss the roles and responsibilities of the data generators, data users and journal editors.

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PLOS ONE: De novo Genome Assembly of the Fungal...

PLOS ONE: De novo Genome Assembly of the Fungal... | Plant Genomics | Scoop.it
As a natural pathogen of cheatgrass, P. semeniperda has potential as a biocontrol agent due to its effectiveness at killing seeds within the seed bank; however, few genetic resources exist for the fungus.
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Plant Cell: Geminivirus Vectors Deliver Reagent...

Plant Cell: Geminivirus Vectors Deliver Reagent... | Plant Genomics | Scoop.it
Jennifer Mach commentary http://www.plantcell.org/content/early/2014/01/16/tpc.114.122606.full.pdf+html Baltes et al.
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Proteomic investigation of an Escherichia coli terpene production factory: prospects for metabolic engineering - White Rose Etheses Online

Proteomic investigation of an Escherichia coli terpene production factory: prospects for metabolic engineering - White Rose Etheses Online | Plant Genomics | Scoop.it
Proteomic investigation of an Escherichia coli terpene production factory: prospects for metabolic engin... http://t.co/N5jF6oXBc2 #wreo
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Single-nuclei genome sequencing: a breakthrough in studying Mycorrhizal fungi

Single-nuclei genome sequencing: a breakthrough in studying Mycorrhizal fungi | Plant Genomics | Scoop.it
The Human Genome Project officially started in 1990 and the final polished version was released in 2006. The project cost billions of U.S Dollars and had scientists around the world working upon it...
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Multiple recent horizontal transfers of a large genomic region in cheese making fungi : Nature Communications : Nature Publishing Group

Multiple recent horizontal transfers of a large genomic region in cheese making fungi : Nature Communications : Nature Publishing Group | Plant Genomics | Scoop.it
reading: cheeseman et al. multiple recent horizontal transfers of a large genomic region in cheese making fungi - http://t.co/dHP1zflgLz
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Possible loss of the chloroplast genome in the parasitic flowering plant Rafflesia lagascae (Rafflesiaceae)

Possible loss of the chloroplast genome in the parasitic flowering plant Rafflesia lagascae (Rafflesiaceae) | Plant Genomics | Scoop.it
RT @coalescent: Rafflesia may be the first plant group having no recognizable plastid genome http://t.co/r2SjwlhBId
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Plant genomics: A genome conserved and a genom... [Nat Rev Genet. 2014] - PubMed - NCBI

PubMed comprises more than 23 million citations for biomedical literature from MEDLINE, life science journals, and online books. Citations may include links to full-text content from PubMed Central and publisher web sites.
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Transcriptomic profiling to identify genes involved in Fusarium mycotoxin Deoxynivalenol and Zearalenone tolerance in the mycoparasitic fungus Clonostachys rosea

Transcriptomic profiling to identify genes involved in Fusarium mycotoxin Deoxynivalenol and Zearalenone tolerance in the mycoparasitic fungus Clonostachys rosea | Plant Genomics | Scoop.it
By Chatchai Kosawang Background: Clonostachys rosea strain IK726 is a mycoparasitic fungus capable of controlling mycotoxin-producing Fusarium species, including F. graminearum and F. culmorum, kno...
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Genome Biology | Full text | Next-generation plant science: putting ...

A Report on the Plant Genomes & Biotechnology: From Genes to Networks meeting, held at the Cold Spring Harbor Laboratories, USA, December 4–7, 2013.
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Assembly and Validation of the Genome of the Nonmodel Basal Angiosperm Amborella

Biswapriya Biswavas Misra's insight:

Genome sequencing with next-generation sequence (NGS) technologies can now be applied to organisms pivotal to addressing fundamental biological questions, but with genomes previously considered intractable or too expensive to undertake. However, for species with large and complex genomes, extensive genetic and physical map resources have, until now, been required to direct the sequencing effort and sequence assembly. As these resources are unavailable for most species, assembling high-quality genome sequences from NGS data remains challenging. We describe a strategy that uses NGS, fluorescence in situ hybridization, and whole-genome mapping to assemble a high-quality genome sequence for Amborella trichopoda, a nonmodel species crucial to understanding flowering plant evolution. These methods are applicable to many other organisms with limited genomic resources.

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Deep sequencing of the tobacco mitochondrial transcriptome reveals expressed ... - 7thSpace Interactive (press release)

Deep sequencing of the tobacco mitochondrial transcriptome reveals expressed ...
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Construction of a high-quality genomic BAC library for Chinese peanut cultivar Zhonghua 8 with high oil content

Construction of a high-quality genomic BAC library for Chinese peanut cultivar Zhonghua 8 with high oil content - up-to-the-minute news and headlines.
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