Plant Biology Teaching Resources (Higher Education)
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Hooks and hot topics for university teachers and students
Curated by Mary Williams
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North American Invasive Species: Information, Images, Videos, Distribution Maps

North American Invasive Species: Information, Images, Videos, Distribution Maps | Plant Biology Teaching Resources (Higher Education) | Scoop.it

"Invasive Species: any species of insects, animals, plants and pathogens, including its seeds, eggs, spores, or other biological material capable of propagating that species, that is not native to that ecosystem; and whose introduction does or is likely to cause economic or environmental harm or harm to human health."

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"Biotech and Mol Bio" AnnBot Climate Change, Agriculture & Food Security MicrobiologyBytes Plant-Microbe Interaction Wheat
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Plant Biology videos from Annual Reviews - interviews and lectures

Plant Biology videos from Annual Reviews - interviews and lectures | Plant Biology Teaching Resources (Higher Education) | Scoop.it
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PLOS Pathogens: The Xanthomonas campestris Type III Effector XopJ Targets the Host Cell Proteasome to Suppress Salicylic-Acid Mediated Plant Defence

PLOS Pathogens: The Xanthomonas campestris Type III Effector XopJ Targets the Host Cell Proteasome to Suppress Salicylic-Acid Mediated Plant Defence | Plant Biology Teaching Resources (Higher Education) | Scoop.it

(via @SuayibUestuen, thanks!)

 

The phytopathogenic bacterium Xanthomonas campestris pv. vesicatoria (Xcv) requires type III effector proteins (T3Es) for virulence. After translocation into the host cell, T3Es are thought to interact with components of host immunity to suppress defence responses. XopJ is a T3E protein from Xcv that interferes with plant immune responses; however, its host cellular target is unknown. Here we show that XopJ interacts with the proteasomal subunit RPT6 in yeast andin planta to inhibit proteasome activity. A C235A mutation within the catalytic triad of XopJ as well as a G2A exchange within the N-terminal myristoylation motif abolishes the ability of XopJ to inhibit the proteasome. Xcv ΔxopJ mutants are impaired in growth and display accelerated symptom development including tissue necrosis on susceptible pepper leaves. Application of the proteasome inhibitor MG132 restored the ability of the Xcv ΔxopJ to attenuate the development of leaf necrosis. The XopJ dependent delay of tissue degeneration correlates with reduced levels of salicylic acid (SA) and changes in defence- and senescence-associated gene expression. Necrosis upon infection with Xcv ΔxopJ was greatly reduced in pepper plants with reduced expression of NPR1, a central regulator of SA responses, demonstrating the involvement of SA-signalling in the development of XopJ dependent phenotypes. Our results suggest that XopJ-mediated inhibition of the proteasome interferes with SA-dependent defence response to attenuate onset of necrosis and to alter host transcription. A central role of the proteasome in plant defence is discussed.


Via Nicolas Denancé
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Educational resources from Wellcome Trust. Vital statistics

Educational resources from Wellcome Trust. Vital statistics | Plant Biology Teaching Resources (Higher Education) | Scoop.it
The Wellcome Trust believes in bringing cutting edge science to the classroom. The latest edition of our Big Picture magazine for students and teachers focuses on making sense of numbers, teaching ...
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Animation - What is fat? - George Zaidan (TEDed)

Excellent animation that defines different types of fat (saturated vs unsaturated, cis vs trans).

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Current Biology - Membrane-Bound RLCKs LIP1 and LIP2 Are Essential Male Factors Controlling Male-Female Attraction in Arabidopsis

Current Biology - Membrane-Bound RLCKs LIP1 and LIP2 Are Essential Male Factors Controlling Male-Female Attraction in Arabidopsis | Plant Biology Teaching Resources (Higher Education) | Scoop.it

Successful sexual reproduction in animals and plants requires communication between male and female gametes. In flowering plants, unlike in animals, eggs and sperm cells are enclosed in multicellular embryo sacs and pollen grains, respectively [1]; guided growth of the pollen tube into the ovule is necessary for fertilization [2]. Pollen tube guidance requires accurate perception of ovule-emitted guidance cues by the receptors in pollen tubes [2, 3 and 4]. Although several ovule-secreted peptides controlling pollen tube guidance have recently been identified, i.e., maize EGG APPARATUS1 (EA1) [5], Torenia LURE1/LURE2 [6], and Arabidopsis CRP810_1/AtLURE1 [7], little is known about the receptors. Here, we identified two receptor-like kinase (RLK) genes preferentially expressed in Arabidopsis pollen tubes, Lost In Pollen tube guidance 1 (LIP1) and 2 (LIP2), which are involved in guidance control of pollen tubes. LIP1 and LIP2 were anchored to the membrane in the pollen tube tip region via palmitoylation, which was essential for their guidance control. Simultaneous inactivation of LIP1 and LIP2 led to impaired pollen tube guidance into micropyle and significantly reduced attraction of pollen tubes toward AtLURE1 [7]. Our results suggest that LIP1 and LIP2 represent essential components of the pollen tube receptor complex to perceive the female signal AtLURE1 for micropylar pollen tube guidance.


Via Guogen Yang
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The Atlantic: Healthy Soil Microbes, Healthy People

The Atlantic: Healthy Soil Microbes, Healthy People | Plant Biology Teaching Resources (Higher Education) | Scoop.it
The microbial community in the ground is as important as the one in our guts.
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Nature Genetics: The Capsella rubella genome and the genomic consequences of rapid mating system evolution

Nature Genetics: The Capsella rubella genome and the genomic consequences of rapid mating system evolution | Plant Biology Teaching Resources (Higher Education) | Scoop.it

"The switch from obligatory outcrossing to predominant self fertilization in plants is one of the most striking and repeated examples of convergent evolution. Selfing is thought to be favored because of its inherent transmission advantage, as well as the advantage of assured reproduction when mates, pollinators or both are scarce. Selfing should evolve whenever these advantages outweigh the costs associated with inbreeding depression."

 

Here's a summary from phys.org

http://phys.org/news/2013-06-self-fertilizing-contribute-demise.html

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LA Times: GM cotton helps farmers escape malnutrition (PLOS ONE)

LA Times: GM cotton helps farmers escape malnutrition (PLOS ONE) | Plant Biology Teaching Resources (Higher Education) | Scoop.it
People opposed to genetically modified organisms often insist that the plants are no good for anyone except the companies, like Monsanto Co. , that sell GMO seeds.
Mary Williams's insight:

Here's the new PLOS ONE article this newspaper story references

http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0064879

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Illumination: Next Steps in Ag- Jobs- for the Willing!

Illumination: Next Steps in Ag- Jobs- for the Willing! | Plant Biology Teaching Resources (Higher Education) | Scoop.it

"Whereas job growth in many sectors is stagnant, there is huge demand for skilled horticulturalists, that is, students trained in fruit and vegetable crop production. We need people that understand plant physiology, plant nutrition, plant pathology and entomology, along with a handle on business and communication".

Darin Hoagland's curator insight, June 14, 11:57 AM

Agricultural jobs working with plants and especially plant scientists are no doubt available in many sectors of crop production.  However, a strong work ethic is critical as some of these jobs require long work weeks with little time for personal life.  Thus this blog post is both hopeful and cautionary for those seeking this type of work.  

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New blog, "FLOWERING HIGHLIGHTS"

New blog, "FLOWERING HIGHLIGHTS" | Plant Biology Teaching Resources (Higher Education) | Scoop.it

I just learned about the new blog from the people who bring you the Flowering Newsletter, it's called "Flowering highlights" http://floweringhighlights.org/


"Authoritative commentaries on flowering research".

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Power Plants | Guest Blog, Scientific American Blog Network

Power Plants | Guest Blog, Scientific American Blog Network | Plant Biology Teaching Resources (Higher Education) | Scoop.it

Think about it. Everything you have ever eaten, or will ever eat, can ultimately be traced back to an organism carrying out photosynthesis.


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Plant-Plant Interactions, the newest Teaching Tool online

Plant-Plant Interactions, the newest Teaching Tool online | Plant Biology Teaching Resources (Higher Education) | Scoop.it

Online today, the newest Teaching Tool in Plant Biology, "Plant-Plant Interactions", by Ariel Novoplansky and Mary Williams. It's all about how plants sense and respond to their neighbors. Subscription to Plant Cell required. Slides, lecture notes and teaching guide too!
http://www.plantcell.org/site/teachingtools/TTPB25.xhtml

Mahani Mohamad's curator insight, June 2, 12:35 PM

to be shared with Jr.

Happy Updates's comment, June 3, 12:55 AM
nice share Mary Williams http://icareeradvice.com/
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Science x2: Back-to-back papers on miRNAs role in age-dependent vernalization response

Science x2: Back-to-back papers on miRNAs role in age-dependent vernalization response | Plant Biology Teaching Resources (Higher Education) | Scoop.it

Mechanisms of Age-Dependent Response to Winter Temperature in Perennial Flowering of Arabis alpina

Sara Bergonzi et al and George Coupland

Science 31 May 2013: 1094-1097.

http://www.sciencemag.org/content/340/6136/1094

 

And

Molecular Basis of Age-Dependent Vernalization in Cardamine flexuosa

Chuan-Miao Zhou,et al and Jia-Wei Wang

Science 31 May 2013: 1097-1100.

www.sciencemag.org/content/340/6136/1097

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Cell - MicroRNAs Inhibit the Translation of Target mRNAs on the Endoplasmic Reticulum in Arabidopsis

Cell - MicroRNAs Inhibit the Translation of Target mRNAs on the Endoplasmic Reticulum in Arabidopsis | Plant Biology Teaching Resources (Higher Education) | Scoop.it

This is from April, but I missed it then. Luckily, I found it now. Interesting study!

 

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Using technology to support student engagement - an example lesson on fungal diversity and genomes

I had an interesting meeting last week about using online resources and tools for student engagement, and to what extent any classroom activity could be done virtually. Another discussion point was to what extent MOOCs can provide meaningful learning experiences.

 

This nice video about the JGI's 1000 fungal genome project suggests a good non-traditional lesson plan. In the four minute video, scientists introduce fungal diversity and what can be learned from fungal genomes. I'd use this as a launching-off point to have the class investigate fungal diversity through individual and group projects, with the "goal" being to select a species as a class mascot. (The goal is also to set up a need-to-know environment so students are motivated to read and learn).

 

Outside of class time, have students individually 1) watch the video, 2) read through the information on the 1000 Fungal genomes project (http://genome.jgi.doe.gov/programs/fungi/1000fungalgenomes.jsf), select a fungal species of interest, and prepare a 3-slide overview about it. (If you like, you can tell them what kinds of information must be included, such where it fits on the fungal tree of life, what kind of interactions it has with plants, and what might be learned from its genome).

 

Then, in class (or online) groups of students would review the 3-slide summaries of the members, and choose the best-of-group. The group then builds on the summary to produce a 3-minute YouTube video that makes the case for why their species is the most interesting and deserving of recognition. If your class meets physically, you can show the videos during class time, If not, the video viewing and voting can take place online. Finally, the class votes to select the species to adopt, with a small prize going to the winning group.

 

Posting the videos publically motivates the students to make the content broadly accessible and the overall quality high. Google documents and Dropboxes provide the students with shared workspaces, and by having the groups make these working materials accessible to you, you can assess the contributions of the group members.

 

If you haven't yet explored the learning opportunities available to students through online resources, I'd encourage you to give it a try.

 

 

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Queen's Honours award for Cathie Martin, Editor in Chief of The Plant Cell

Queen's Honours award for Cathie Martin, Editor in Chief of The Plant Cell | Plant Biology Teaching Resources (Higher Education) | Scoop.it

Cathie Martin is the Editor in Chief of The Plant Cell, and also founded Teaching Tools in Plant Biology as a feature of The Plant Cell. Her research focuses on metabolic processes, and she's known for her lab's development of anthocyanin-rich tomatoes. http://www.jic.ac.uk/staff/cathie-martin/

 

Her work has just been recognized by the awarding of an MBE (Member of the Most Excellent Order of the British Empire). Congratulations!

Jennifer Mach's comment, Today, 9:40 AM
I see that Dr. Martin shares this honor with PJ Harvey-- further indication that Cathie rocks!
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Curr.Opin.Plant Biol. Biomechanics of plant–insect interactions

Curr.Opin.Plant Biol.  Biomechanics of plant–insect interactions | Plant Biology Teaching Resources (Higher Education) | Scoop.it

"Plant–insect interactions are determined by both chemical and physical mechanisms. Biomechanical factors play an important role across many ecological situations, including pollination, herbivory and plant carnivory, and have led to complex adaptations in both plants and insects."

Mary Williams's insight:

Nice review that covers everything from petal texture to carnivorous plant trapping mechanisms. It might appeal to some of your less chemically-included students.

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Trends in Cell Biology - Beyond symmetry-breaking: competition and negative feedback in GTPase regulation

Trends in Cell Biology - Beyond symmetry-breaking: competition and negative feedback in GTPase regulation | Plant Biology Teaching Resources (Higher Education) | Scoop.it

Cortical domains are often specified by the local accumulation of active GTPases. Such domains can arise through spontaneous symmetry-breaking, suggesting that GTPase accumulation occurs via positive feedback. Here, we focus on recent advances in fungal and plant cell models – where new work suggests that polarity-controlling GTPases develop only one ‘front’ because GTPase clusters engage in a winner-takes-all competition. However, in some circumstances two or more GTPase domains can coexist, and the basis for the switch from competition to coexistence remains an open question. Polarity GTPases can undergo oscillatory clustering and dispersal, suggesting that these systems contain negative feedback. Negative feedback may prevent polarity clusters from spreading too far, regulate the balance between competition and coexistence, and provide directional flexibility for cells tracking gradients.


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The Scientist Magazine® In Evolution's Garden (Profile of Brandon Gaut)

The Scientist Magazine® In Evolution's Garden (Profile of Brandon Gaut) | Plant Biology Teaching Resources (Higher Education) | Scoop.it
Raising one evolutionary question after another, Brandon Gaut has harvested a crop of novel findings about how plant genomes evolve.
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Largest-ever philanthropic investment into budding rice scientists

Largest-ever philanthropic investment into budding rice scientists | Plant Biology Teaching Resources (Higher Education) | Scoop.it
A US$3 million donation has established the Lee Foundation Rice Scholarship Program to educate and train future rice scientists.
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Reality Drop: Spread Science about Climate Change. What do you think?

Reality Drop: Spread Science about Climate Change. What do you think? | Plant Biology Teaching Resources (Higher Education) | Scoop.it

Wow - a game where you win points by posting comments on social media sites. The end is good (share science about climate change) but the means is a bit disturbing, to me at least. What do you think of this form of communication?

Heather Thompson's comment, June 9, 8:56 PM
interesting game that is live with real information
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What's in your strawberries? - EiC May 2012

What's in your strawberries? - EiC May 2012 | Plant Biology Teaching Resources (Higher Education) | Scoop.it

Have you ever wondered what makes the colour, taste and smell of strawberries so attractive? Why do the ones you might find growing wild seem tastier? Is there something in the chemistry?


Via Meristemi
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This article from the Royal Society of Chemistry's "Education in Chemistry" journal includes a table showing the structures of the flavor molecules in strawberries. Yum!

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A few highlights of Plant Photobiology 2013

A few highlights of Plant Photobiology 2013 | Plant Biology Teaching Resources (Higher Education) | Scoop.it

Some topics and papers discussed at the recent International Symposium on Plant Photobiology conference. (See here for the full list of speakers and topics http://hallidaylab.bio.ed.ac.uk/ISPP.html).

 

From Rick Vierstra, a preview of an unpublished structure of plant phytochrome (more here http://www.plantphysiol.org/content/161/3/1445.long).

 

From Eberhard Schäfer and we heard about the effects of phytochrome’s rate of dark reversion and nuclear import (http://www.plantcell.org/content/25/2/535.abstract and http://www.pnas.org/content/109/15/5892.abstract).

 

From Christian Fleck we heard about kinetic modeling of phytochrome action (http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0010721).

 

From Peter Quail (and many others) we learned about signaling downstream from phytochrome. See for example (http://www.plantcell.org/content/24/4/1398.abstract) and (http://www.bioone.org/doi/full/10.1199/tab.0148) and (http://www.sciencedirect.com/science/article/pii/S096289241100136X).

 

We heard about shade avoidance and shade tolerance (see http://www.cell.com/trends/plant-science/abstract/S1360-1385%2812%2900215-4 and http://www.bioone.org/doi/full/10.1199/tab.0157).

 

We heard about blue-light receptors and responses, including phototropism, chloroplast movements and stomatal responses. See for example http://www.amjbot.org/content/100/1/35.abstract and http://www.plantcell.org/content/early/2013/02/11/tpc.113.109694.short and http://www.sciencemag.org/content/336/6084/1045.abstract.

 

From Gareth Jenkins, we heard about how plants perceive and respond to UV light (http://www.plantcell.org/content/24/9/3755).

 

We learned about the intersection of light with clocks and metabolism and flowering and everything else, starting with a stellar talk by Stacey Harmer (http://www.annualreviews.org/doi/abs/10.1146/annurev.arplant.043008.092054 and http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1001350).

 

A few common themes: the need to fine-tune the spatial and temporal resolution of models, the importance of temperature, the usefulness of modeling as well as non-plant and non-angiosperm systems to evaluate current models, and the importance of considering all aspects of a gene’s activity, from chromatin dynamics, transcription, splicing, protein stability, binding partners, subcellular localization and post-translational modifications.

 

Finally, light affects EVERYTHING.

 

Coming soon, look for a set of review articles in The Plant Cell in 2014, and an upcoming special issue of JExpBot.

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Three in Development on pattern formation and polarity

Three in Development on pattern formation and polarity | Plant Biology Teaching Resources (Higher Education) | Scoop.it

If you love patterning like I love patterning, you might be interested in these three recent articles in Development.

 

Here's a Hypothesis:

 

"An intracellular partitioning-based framework for tissue cell polarity in plants and animals" http://dev.biologists.org/content/140/10/2061.abstract

 

"We propose that a fundamental building block for tissue cell polarity is the process of intracellular partitioning,which can establish individual cell polarity in the absence of asymmetric cues."

 

 

And another Hypothesis:

 

"Polar auxin transport: models and mechanisms"

http://dev.biologists.org/content/140/11/2253.abstract

 

"Here we propose a new mathematical framework for the analysis of polar auxin transport and present a detailed mathematical analysis of published models."

 

And a Open Access research article on leaf polarity, running title

"ARF3 is a direct target of AS1"

http://dev.biologists.org/content/140/9/1958.short

(Currently one of the most-read articles in Development)

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Applied Mythology: Should the World Keep Feeding Europe?

Applied Mythology: Should the World Keep Feeding Europe? | Plant Biology Teaching Resources (Higher Education) | Scoop.it

Here's a thought-provoking blog post, certainly worth throwing into the classroom mix.

Tania Gammage's curator insight, June 2, 7:45 PM

Useful for Cross Curriculum Sustainablity.....Science ..Geography