Origin of Life: Emergence, Self-organization and Evolution
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A system-centered perspective on the origin and evolution of Life on Earth
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Measuring the Complexity of Ultra-Large-Scale Evolutionary Systems

Measuring the Complexity of Ultra-Large-Scale Evolutionary Systems | Origin of Life: Emergence, Self-organization and Evolution | Scoop.it

 

Ultra-large scale (ULS) systems are becoming pervasive. They are inherently complex, which makes their design and control a challenge for traditional methods. Amoretti and Gershenson propose the design and analysis of ULS systems using measures of complexity, emergence, self-organization, and homeostasis based on information theory. They evaluate the proposal with a ULS computing system provided with genetic adaptation mechanisms. Researchers show the evolution of the system with stable and also changing workload, using different fitness functions. When the adaptive plan forces the system to converge to a predefined performance level, the nodes may result in highly unstable configurations, that correspond to a high variance in time of the measured complexity. Conversely, if the adaptive plan is less "aggressive", the system may be more stable, but the optimal performance may not be achieved.

 

Source:

Michele Amoretti, Carlos Gershenson

Measuring the Complexity of Ultra-Large-Scale Evolutionary Systems

Neural and Evolutionary Computing. Submitted on 27 Jul 2012

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Teaching old dogs new tricks: Biological adaptaion and exaptation

Teaching old dogs new tricks: Biological adaptaion and exaptation | Origin of Life: Emergence, Self-organization and Evolution | Scoop.it

Adaptation and exaptation are two fundamental mechanisms for evolutionary success which play a pivotal role as much as innovation. Baliga and coworkers describe Halobacterium salinarum adaptation to new environments by reprogramming general transcription factors TFBs. Researchers have investigated the “implications of TFB expansions by correlating sequence variations, regulation, and physical interactions of all seven TFBs in Halobacterium salinarum NRC-1 to their fitness landscapes, functional hierarchies, and genetic interactions across 2488 experiments covering combinatorial variations in salt, pH, temperature, and Cu stress”. This study reveals how archea can generate completely novel fitness landscapes “by gene conversion events that introduce subtle changes to the regulation or physical interactions of duplicated TFBs.”

 

Source:

Serdar Turkarslan, David J Reiss, Goodwin Gibbins, Wan Lin Su, Min Pan, J Christopher Bare, Christopher L Plaisier & Nitin S Baliga. Niche adaptation by expansion and reprogramming of general transcription factors. Molecular Systems Biology 7 Article number: 554
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