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place to collect information about constant improvement NGS bioinformatics
Curated by Yadhu Kumar
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Rescooped by Yadhu Kumar from Bioinformatics Software: Sequence Analysis
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Rcount: simple and flexible RNA-Seq read counting


Via Mel Melendrez-Vallard
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Rescooped by Yadhu Kumar from Bioinformatics Software: Sequence Analysis
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[1410.6455] Btrim: A fast, lightweight adapter and quality trimming program for next-generation sequencing technologies

Btrim: A fast, lightweight adapter and quality trimming program for next-generation sequencing technologies « ... http://t.co/663zHuwL2o

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Partek and Life Technologies Partner to Speed Genetic Analysis Validation - MarketWatch (press release)

Partek and Life Technologies Partner to Speed Genetic Analysis ValidationMarketWatch (press release)Their software suite--Partek® Flow™, Partek® Genomics Suite™, and Partek® Pathway™--provides innovative solutions for integrated genomics and is unique...
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RainDance Launches Comprehensive Sequencing Panel for Cancer Mutation ... - EON: Enhanced Online News (press release)

RainDance Launches Comprehensive Sequencing Panel for Cancer Mutation ...EON: Enhanced Online News (press release)CHICAGO--(EON: Enhanced Online News)--RainDance Technologies, Inc., the Digital Biology™ company, today announced the worldwide availability...
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Genome Biology | Abstract | TopHat-Fusion: an algorithm for discovery of novel fusion transcripts

TopHat-Fusion is an algorithm designed to discover transcripts representing fusion gene products, which result from the breakage and re-joining of two different chromosomes, or from rearrangements within a chromosome.
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Rescooped by Yadhu Kumar from Bioinformatics Software: Sequence Analysis
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Seed: a user-friendly tool for exploring and visualizing microbial community data

Seed: a user-friendly tool for exploring and visualizing microbial community data http://t.co/y9abIfpm8Y

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Rescooped by Yadhu Kumar from Bioinformatics Software: Sequence Analysis
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Estimating genotype error rates from high-coverage next-generation sequence data

An international, peer-reviewed genome sciences journal featuring outstanding original research that offers novel insights into the biology of all organisms

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DNA Sequencing Market Expected to Double to $6.6 Billion by 2016 - Sacramento Bee

DNA Sequencing Market Expected to Double to $6.6 Billion by 2016 - Sacramento Bee | next (new) generation bioinformatics | Scoop.it
DNA Sequencing Market Expected to Double to $6.6 Billion by 2016Sacramento Bee... as will pharmaceutical, diagnostics, nanotechnology, bioinformatics, semiconductor, and biotechnology companies.
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Performance comparison of exome DNA sequencing technologies : Nature Biotechnology : Nature Publishing Group

Performance comparison of exome DNA sequencing technologies : Nature Biotechnology : Nature Publishing Group | next (new) generation bioinformatics | Scoop.it
Capturing and sequencing only the coding regions of the human genome leverages resources in the pursuit of rare disease-causing mutations. Clark et al.
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Forge Genome Assembler

A parallel, MPI based genome assembler for mixed read types. It runs on one or more machines in a network and can scale to very large numbers of reads provided there is enough collective memory on the machines used.

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Joseph Mafofo's curator insight, December 7, 2013 3:47 PM

I'm thrilled with the performance of abyss-pe in handling paired-end illumina data, however, it doesn't do so well with mate pair data especially from the Nextera protocol.