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Rescooped by Larry Bernstein from Virology and Bioinformatics from Virology.ca onto Metabolomics and Disease
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J Biomol NMR: Solution structure of the Magnaporthe oryzae avirulence protein AvrPiz-t (2013)

J Biomol NMR: Solution structure of the Magnaporthe oryzae avirulence protein AvrPiz-t (2013) | Metabolomics and Disease | Scoop.it

The AvrPiz-t gene encodes a small protein predicted to be secreted that shows no homology to known proteins and is 108 amino acids in length. AvrPiz-t can suppress programmed cell death (PCD) induced by BAX in tobacco, suggesting that it might contribute to the pathogenicity of M. oryzae. These data suggested that AvrPiz-t functions primarily as a virulence effector contributing to the pathogenicity of M. oryzae. To further understand the mechanism of the pathogenicity-associated function of AvrPiz-t, we determined its solution structure.


Via Elsa Ballini, Kamoun Lab @ TSL, Loiret David
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interesting work

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Virology and Bioinformatics from Virology.ca Bio-informatics Cardiovascular Disease: PHARMACO-THERAPY Metabonomic and Cancer
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Rescooped by Larry Bernstein from Cardiotoxicity
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The FDA, Surrogate Endpoints, And Blood Pressure Drugs - Forbes

The FDA, Surrogate Endpoints, And Blood Pressure Drugs - Forbes | Metabolomics and Disease | Scoop.it
The FDA, Surrogate Endpoints, And Blood Pressure Drugs Forbes With few exceptions, current labeling for antihypertensive drugs includes only the information that these drugs are indicated to reduce blood pressure; the labeling does not include...

Via Aviva Lev-Ari, PhD, RN
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SEATTLE: Two Science Translational Medicine Reports: DREAM and Sage Bionetworks Tap into the Wisdom of the Crowd to Fight the Challenge of Breast Cancer Prognosis and Treatment | Business Wire | Ro...

SEATTLE: Two Science Translational Medicine Reports: DREAM and Sage Bionetworks Tap into the Wisdom of the Crowd to Fight the Challenge of Breast Cancer Prognosis and Treatment | Business Wire | Ro... | Metabolomics and Disease | Scoop.it
Two new reports issuing in Science Translational Medicine (STM) today showcase the potential of teams of scientists working together to solve increasingly complex medical problems.
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Oxford's isoprostane assay does not require expensive immunoaffinity columns.

Oxford's isoprostane assay does not require expensive immunoaffinity columns. | Metabolomics and Disease | Scoop.it
Isoprostanes are a group of prostaglandin-like compounds that are produced by the reaction of free radicals with arachidonic acid, including arachidonic esters in phospholipids.
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Protein Lounge - Featured Pathway, Signaling Pathway, Metabolic Pathway, Biochemical Pathway

Protein Lounge - Featured Pathway, Signaling Pathway, Metabolic Pathway, Biochemical Pathway | Metabolomics and Disease | Scoop.it
Interactive web-based biological databases and softwares for life-scientists and researchers.
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Crosstalk between critical cell-signaling pathways holds clues to tumor invasion and metastasis

Two signaling pathways essential to normal human development -- the Wnt/Wingless and epidermal growth factor receptor pathways -- interact in ways that can promote tumor cell invasion and metastasis, researchers reported.
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Prespecified Candidate Biomarkers Identify Follicular Lymphoma Patients Who Achieved Longer Progression-Free Survival with Bortezomib–Rituximab Versus Rituximab

Prespecified Candidate Biomarkers Identify Follicular Lymphoma Patients Who Achieved Longer
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Genome study suggests new strategies for understanding and treating pulmonary fibrosis

A new genome-wide association study of more than 6,000 people has identified seven new genetic regions associated with pulmonary fibrosis.
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Rescooped by Larry Bernstein from Bio-informatics
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Researchers develop compilation of protein interaction data ...

Researchers have created a platform detailing all atomic data on protein structures and protein interactions for eight organisms.

Via Loiret David
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Rescooped by Larry Bernstein from Bio-informatics
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A large-scale evaluation of computational protein function prediction : Nature Methods : Nature Publishing Group

A large-scale evaluation of computational protein function prediction : Nature Methods : Nature Publishing Group | Metabolomics and Disease | Scoop.it
A report on the results of the first large-scale community-based critical assessment of protein function annotation (CAFA) experiment.

Via Loiret David
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Rescooped by Larry Bernstein from Bio-informatics
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New method for uncovering side effects before a drug hits the market - Drug Discovery Today

New method for uncovering side effects before a drug hits the market - Drug Discovery Today | Metabolomics and Disease | Scoop.it
Side effects are a major reason that drugs are taken off the market and a major reason why patients stop taking their medications, but scientists are now reporting the development of a new way to predict those adverse reactions ahead of time.

Via Ramesh S Donadi, Loiret David
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Rescooped by Larry Bernstein from Bio-informatics
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PLOS Computational Biology: The Underlying Molecular and Network Level Mechanisms in the Evolution of Robustness in Gene Regulatory Networks

PLOS Computational Biology: The Underlying Molecular and Network Level Mechanisms in the Evolution of Robustness in Gene Regulatory Networks | Metabolomics and Disease | Scoop.it
PLOS Computational Biology is an open-access (Underlying Molecular & Network Level Mechanisms in Evolution of #Robustness in Gene Regulatory #Networks http://t.co/9N0Lc7rX #futuremed)...

Via Loiret David
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Rescooped by Larry Bernstein from Bio-informatics
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Adding Protein Context to the Human Protein-Protein Interaction Network to Reveal Meaningful Interactions

Adding Protein Context to the Human Protein-Protein Interaction Network to Reveal Meaningful Interactions | Metabolomics and Disease | Scoop.it
by Martin H. Schaefer, Tiago J. S. Lopes, Nancy Mah, Jason E. Shoemaker, Yukiko Matsuoka, Jean-Fred Fontaine, Caroline Louis-Jeune, Amie J. Eisfeld, Gabriele Neumann, Carol Perez-Iratxeta, Yoshihiro Kawaoka, Hiroaki Kitano, Miguel A.

Via Loiret David
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New technique can identify role of proteins with unknown function

New technique can identify role of proteins with unknown function | Metabolomics and Disease | Scoop.it
(Phys.org)—An ingenious new technique is making it quicker and easier for scientists to identify the function of uncharacterized proteins in cells.

Via Loiret David
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Heritage-DREAM, National Cancer Institute Breast Cancer Network Inference ... - MarketWatch (press release)

Heritage-DREAM, National Cancer Institute Breast Cancer Network Inference ...
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Futurity.org

Futurity.org | Metabolomics and Disease | Scoop.it
Research news from leading universities (Interesting approach.
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Cerebrospinal fluid biomarkers in Parkinson disease : Abstract : Nature Reviews Neurology

RT @NatRevNeurol: On day four of #ParkinsonsAwarenessWeek check out this Review from Parnetti et al. on CSF biomarkers in PD http://t.co/nbUtIHLbdG (£)
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The coming age of data-driven medicine: translational bioinformatics' next frontier

RT @DrKhouryCDC: Coming age of data science in medicine: emergence of translational bioinformatics #JAMIA http://t.co/BXV4WZFm8j
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Different signaling pathways of cholangiocarcinoma

Different signaling pathways of cholangiocarcinoma | Metabolomics and Disease | Scoop.it
Overexpression of receptor tyrosine kinase Met has frequently been found in cholangiocarcinoma.
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Fish DNA Makes Limbs Sprout in Mice

Fish DNA Makes Limbs Sprout in Mice | Metabolomics and Disease | Scoop.it
The genome of a primitive fish called a coelacanth contains DNA that could reveal how fish evolved limbs to colonize land (Genome of the #Coelacanth has been sequenced; DNA makes limbs sprout in mice http://t.co/EpMFJVBCjJ)...
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Rescooped by Larry Bernstein from Bio-informatics
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Evolution of Proteins Shows Quick Folders are the Best - Scicasts

Evolution of Proteins Shows Quick Folders are the Best - Scicasts | Metabolomics and Disease | Scoop.it

Evolution of Proteins Shows Quick Folders are the Best Scicasts The group of Gustavo Caetano-Anolles, head of the Evolutionary Bioinformatics Laboratory at Urbana-Champaign, had originally classified most structurally known proteins from the...


Via Loiret David
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Rescooped by Larry Bernstein from Bio-informatics
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PAPTi: A Peptide Aptamer Interference Toolkit for Perturbation of Protein-Protein Interaction Networks : Scientific Reports : Nature Publishing Group

PAPTi: A Peptide Aptamer Interference Toolkit for Perturbation of Protein-Protein Interaction Networks : Scientific Reports : Nature Publishing Group | Metabolomics and Disease | Scoop.it
Signaling proteins often form dynamic protein-protein interaction (PPI) complexes to achieve multi-functionality.

Via Loiret David
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Not just signaling proteins.  This is seen in circuating proteins made by the liver.  I have not seen such a diagram.

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Rescooped by Larry Bernstein from Virology and Bioinformatics from Virology.ca
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J Biomol NMR: Solution structure of the Magnaporthe oryzae avirulence protein AvrPiz-t (2013)

J Biomol NMR: Solution structure of the Magnaporthe oryzae avirulence protein AvrPiz-t (2013) | Metabolomics and Disease | Scoop.it

The AvrPiz-t gene encodes a small protein predicted to be secreted that shows no homology to known proteins and is 108 amino acids in length. AvrPiz-t can suppress programmed cell death (PCD) induced by BAX in tobacco, suggesting that it might contribute to the pathogenicity of M. oryzae. These data suggested that AvrPiz-t functions primarily as a virulence effector contributing to the pathogenicity of M. oryzae. To further understand the mechanism of the pathogenicity-associated function of AvrPiz-t, we determined its solution structure.


Via Elsa Ballini, Kamoun Lab @ TSL, Loiret David
Larry Bernstein's insight:

interesting work

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Rescooped by Larry Bernstein from Bio-informatics
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FOLD-RATE - Prediction of Protein Folding Rates from Amino Acid ...

FOLD-RATE - Prediction of Protein Folding Rates from Amino Acid ... | Metabolomics and Disease | Scoop.it
FOLD-RATE is a web server for predicting the folding rates of proteins from their amino acid sequences. The relationship between amino acid properties and protein folding rates has been systematically analyzed and a ...

Via Loiret David
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Rescooped by Larry Bernstein from Bio-informatics
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2008 archive video: Drug Discovery by Dr. Rommie Amaro

Dr. Rommie Amaro, a computational and theoretical biophysical chemist in the McCammon Lab at UC San Dieo, studies infectious diseases such as ...youtube.com

Via Ramesh S Donadi, Loiret David
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Rescooped by Larry Bernstein from Bio-informatics
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STITCH: chemical association networks

STITCH: chemical association networks | Metabolomics and Disease | Scoop.it
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