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CBiB - Bordeaux Bioinformatics Center
The Center for Bioinformatics (CBiB) provides access to high-performance computing resources, data analysis and programming expertise
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Algorithms for Molecular Biology | Abstract | Separating metagenomic short reads into genomes via clustering

In this work, we present a two-phase heuristic algorithm for separating short paired-end reads from different genomes in a metagenomic dataset.

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Error, alignment and the myth of the complete genome

Error, alignment and the myth of the complete genome | CBiB - Bordeaux Bioinformatics Center | Scoop.it
A complete genome is a myth. A combination of error rate, alignment difficulty, and read length all conspire to limit a complete sequence.
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Improved gap size estimation for scaffolding algorithms

Improved gap size estimation for scaffolding algorithms | CBiB - Bordeaux Bioinformatics Center | Scoop.it
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Sample richness and genetic diversity as drivers of chimera formation in nSSU metagenetic analyses

Sample richness and genetic diversity as drivers of chimera formation in nSSU metagenetic analyses | CBiB - Bordeaux Bioinformatics Center | Scoop.it
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PLOS ONE: Analysis of the Cystic Fibrosis Lung Microbiota via Serial Illumina Sequencing of Bacterial 16S rRNA Hypervariable Regions

PLOS ONE: Analysis of the Cystic Fibrosis Lung Microbiota via Serial Illumina Sequencing of Bacterial 16S rRNA Hypervariable Regions | CBiB - Bordeaux Bioinformatics Center | Scoop.it
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Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies | CBiB - Bordeaux Bioinformatics Center | Scoop.it
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Compression of next-generation sequencing reads aided by highly efficient de novo assembly

Compression of next-generation sequencing reads aided by highly efficient de novo assembly | CBiB - Bordeaux Bioinformatics Center | Scoop.it
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PLOS ONE: MOCAT: A Metagenomics Assembly and Gene Prediction Toolkit

PLOS ONE: MOCAT: A Metagenomics Assembly and Gene Prediction Toolkit | CBiB - Bordeaux Bioinformatics Center | Scoop.it
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