CBiB - Bordeaux Bioinformatics Center
2.9K views | +2 today
Follow
CBiB - Bordeaux Bioinformatics Center
The Center for Bioinformatics (CBiB) provides access to high-performance computing resources, data analysis and programming expertise
Curated by CBiB
Your new post is loading...
Your new post is loading...
Scooped by CBiB
Scoop.it!

PLOS ONE: Generation of Artificial FASTQ Files to Evaluate the Performance of Next-Generation Sequencing Pipelines

PLOS ONE: Generation of Artificial FASTQ Files to Evaluate the Performance of Next-Generation Sequencing Pipelines | CBiB - Bordeaux Bioinformatics Center | Scoop.it
more...
No comment yet.
Scooped by CBiB
Scoop.it!

The ISME Journal - Selection of primers for optimal taxonomic classification of environmental 16S rRNA gene sequences

The ISME Journal - Selection of primers for optimal taxonomic classification of environmental 16S rRNA gene sequences | CBiB - Bordeaux Bioinformatics Center | Scoop.it
more...
No comment yet.
Scooped by CBiB
Scoop.it!

CRAM: a next-gen compression toolkit launches

CRAM: a next-gen compression toolkit launches | CBiB - Bordeaux Bioinformatics Center | Scoop.it

CRAM version 1.0 released. Compressing DNA sequences hits production. ENA will now accept CRAM for submissions.

more...
No comment yet.
Scooped by CBiB
Scoop.it!

Oxford Nanopore to Unveil New DNA Sequencers This Week

Oxford Nanopore to Unveil New DNA Sequencers This Week | CBiB - Bordeaux Bioinformatics Center | Scoop.it
Oxford Nanopore Technologies Ltd.,
the closely held company developing a portable gene-sequencing
device that will sell for less than $1,000, plans to unveil two
instruments that use its novel technology today.
more...
No comment yet.
Scooped by CBiB
Scoop.it!

MetaVelvet: an extension of Velvet assembler to de novo metagenome assembly from short sequence reads

MetaVelvet: an extension of Velvet assembler to de novo metagenome assembly from short sequence reads | CBiB - Bordeaux Bioinformatics Center | Scoop.it
more...
No comment yet.
Scooped by CBiB
Scoop.it!

BMC Bioinformatics | Abstract | Denoising PCR-amplified metagenome data

BMC Bioinformatics | Abstract | Denoising PCR-amplified metagenome data | CBiB - Bordeaux Bioinformatics Center | Scoop.it

PCR amplification and high-throughput sequencing theoretically enable the characterization of the finest-scale diversity in natural microbial and viral populations, but each of these methods introduces random errors that are difficult to distinguish from genuine biological diversity. Several approaches have been proposed to denoise these data but lack either speed or accuracy.

more...
No comment yet.
Scooped by CBiB
Scoop.it!

PLOS Computational Biology: Incorporating 16S Gene Copy Number Information Improves Estimates of Microbial Diversity and Abundance

PLOS Computational Biology: Incorporating 16S Gene Copy Number Information Improves Estimates of Microbial Diversity and Abundance | CBiB - Bordeaux Bioinformatics Center | Scoop.it
PLOS Computational Biology is an open-access...
more...
No comment yet.
Scooped by CBiB
Scoop.it!

Species Identification and Unbiased Profiling of Complex Microbial Communities Using Shotgun Illumina Sequencing of 16S rRNA Amplicon Sequences

more...
No comment yet.
Scooped by CBiB
Scoop.it!

The ISME Journal - Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

The ISME Journal - Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms | CBiB - Bordeaux Bioinformatics Center | Scoop.it
more...
No comment yet.
Scooped by CBiB
Scoop.it!

Minia: implementation of the "Space-efficient and exact de Bruijn graph representation based on a Bloom filter" article

Minia: implementation of the "Space-efficient and exact de Bruijn graph representation based on a Bloom filter" article | CBiB - Bordeaux Bioinformatics Center | Scoop.it
more...
No comment yet.
Scooped by CBiB
Scoop.it!

Finished bacterial genomes from shotgun sequence data

Finished bacterial genomes from shotgun sequence data | CBiB - Bordeaux Bioinformatics Center | Scoop.it
An international, peer-reviewed genome sciences journal featuring outstanding original research that offers novel insights into the biology of all organisms...
more...
No comment yet.
Scooped by CBiB
Scoop.it!

DRUM: Computational Metagenomics: Network, Classification and Assembly

DRUM: Computational Metagenomics: Network, Classification and Assembly | CBiB - Bordeaux Bioinformatics Center | Scoop.it

PhD thesis of interest from Bo Liu (w/ Mihai Pop): Computational Metagenomics: Network, Classification and Assembly

more...
No comment yet.
Scooped by CBiB
Scoop.it!

COSMOS - COordination of Standards in MetabOlomicS | http://cosmos-fp7.eu

COSMOS - COordination of Standards in MetabOlomicS | http://cosmos-fp7.eu | CBiB - Bordeaux Bioinformatics Center | Scoop.it

The CBiB is a partner of COSMOS - COordination of Standards in MetabOlomicS funded through FP-7 EC Grant

more...
No comment yet.
Scooped by CBiB
Scoop.it!

Greengenes 12_10 is released!

Greengenes 12_10 is released! | CBiB - Bordeaux Bioinformatics Center | Scoop.it
We’re pleased to announce that the Greengenes 12_10 release is live. This release takes Greengenes from 408k sequences to over 1 million. At the OTU level, Greengenes has grown from 35k 97% O...
more...
No comment yet.