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ISB Joins Global Alliance

ISB Joins Global Alliance | Bioinformatics Training | Scoop.it
By Gustavo Glusman, ISB Senior Research Scientist
ISB has joined the Global Alliance for responsible sharing of genomic and clinical data. You can read the white paper here.
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Bioinformatics Training
Bioinformatics, blended with education and health sciences subjects
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Rescooped by Pedro Fernandes from Bioinformatics Software: Sequence Analysis
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Building Bioinformatics Solutions: with Perl, R and MySQL

Building Bioinformatics Solutions: with Perl, R and MySQL Offer Price $128.25 ISBN:0199230196 Authors Conrad Bessant, Ian Shadforth, Darren Oakley List Price : $135.00 Availablity Usually ships in 24 hours Publisher : Oxford University Press, USA...

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Rescooped by Pedro Fernandes from Virology and Bioinformatics from Virology.ca
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Vaccines Work. Here Are the Facts.

Vaccines Work. Here Are the Facts. - The Nib - Medium
The risks, the misinformation, and the science behind history’s greatest life saver

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Compression of High Throughput Sequencing Data with Probabilistic de Bruijn Graph « Homolog.us – Bioinformatics

Compression of High Throughput Sequencing Data with Probabilistic de Bruijn Graph « Homolog.us – Bioinformatics | Bioinformatics Training | Scoop.it
@RayanChikhi mentioned in twitter about this new paper –
“A super-efficient de novo read compression algorithm (Leon) from @GuillaumeRizk et al.

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The Sorghum Transcriptome Database | RNA-Seq Blog

The Sorghum Transcriptome Database | RNA-Seq Blog | Bioinformatics Training | Scoop.it
In transcriptome analysis, accurate annotation of each transcriptional unit and its expression profile is essential. A full-length cDNA (FL-cDNA) collection

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Identifying and correcting errors in draft genomes

Identifying and correcting errors in draft genomes | Bioinformatics Training | Scoop.it
Over the past decade we have seen an exponential increase in the number of sequenced, assembled, and annotated genomes. These these genomes are essential for pretty much any genomics research. If y...

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Genome alignment with graph data structures: a comparison « Homolog.us – Bioinformatics

Genome alignment with graph data structures: a comparison « Homolog.us – Bioinformatics | Bioinformatics Training | Scoop.it
Interesting mathematical paper
Background
Recent advances in rapid, low-cost sequencing have opened up the opportunity to study complete genome sequences.

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A Massively Parallel Pipeline to Clone DNA Variants and Examine Molecular Phenotypes of Human Disease Mutations

A Massively Parallel Pipeline to Clone DNA Variants and Examine Molecular Phenotypes of Human Disease Mutations | Bioinformatics Training | Scoop.it
PLOS Genetics is an open-access

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Rescooped by Pedro Fernandes from Bioinformatics Software: Sequence Analysis
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Bayesian Inference of Sampled Ancestor Trees for Epidemiology and Fossil Calibration

Bayesian Inference of Sampled Ancestor Trees for Epidemiology and Fossil Calibration | Bioinformatics Training | Scoop.it
PLOS Computational Biology is an open-access

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MTide – an integrated tool for the identification of miRNA-target interaction in plants | RNA-Seq Blog

MTide – an integrated tool for the identification of miRNA-target interaction in plants | RNA-Seq Blog | Bioinformatics Training | Scoop.it
Small RNA sequencing and degradome sequencing (also known as parallel analysis of RNA ends) have provided rich information on the microRNA (miRNA) and its

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A metagenomic pipeline integrating predictive profiling methods and complex networks for the analysis of NGS microbiome data

A metagenomic pipeline integrating predictive profiling methods and complex networks for the analysis of NGS microbiome data | Bioinformatics Training | Scoop.it
A metagenomic pipeline integrating predictive profiling methods and complex networks for the analysis of NGS microbiome data

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Rescooped by Pedro Fernandes from Tools and tips for scientific tinkers and tailors
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New Nanopore Paper by Phil Ashton « Homolog.us – Bioinformatics

New Nanopore Paper by Phil Ashton « Homolog.us – Bioinformatics | Bioinformatics Training | Scoop.it
Added @pathogenomenick table showing no difference between pacbio and ont2d error rates in R7.3 chemistry @infoecho http://t.co/5tGOJ0LtVA

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Rescooped by Pedro Fernandes from Bioinformatics Software: Sequence Analysis
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Annotate your RNA-Seq data with NextBio Research

Annotate your RNA-Seq data with NextBio Research | Bioinformatics Training | Scoop.it
We've developed a new BaseSpace app named NextBio Annotates RNA-Seq that lets you 'test-drive' NextBio Research on your RNA-Seq data. With a few clicks, you can find how the most differentially exp...

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Rescooped by Pedro Fernandes from Virology and Bioinformatics from Virology.ca
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Oncolytic viruses as anticancer vaccines

Oncolytic viruses as anticancer vaccines | Bioinformatics Training | Scoop.it
Oncolytic viruses are natural or genetically modified viral species that selectively infect and kill cancer cells.

Via Chris Upton + helpers
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Rescooped by Pedro Fernandes from Virology and Bioinformatics from Virology.ca
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Cold coddles colds | Science News

Cold coddles colds | Science News | Bioinformatics Training | Scoop.it
Antiviral responses aren’t as effective against common cold viruses in cooler temperatures.

Via Chris Upton + helpers
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Benchmarking variation and RNA-seq analyses on Amazon Web Services with Docker

Benchmarking variation and RNA-seq analyses on Amazon Web Services with Docker | Bioinformatics Training | Scoop.it
Overview We developed a freely available, easy to run implementation of bcbio-nextgen on Amazon Web Services (AWS) using Docker. bcbio is a community developed tool providing validated and scalable...
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Rescooped by Pedro Fernandes from Health and Biomedical Informatics
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Teaching Bioinformatics in Concert

Teaching Bioinformatics in Concert | Bioinformatics Training | Scoop.it
PLOS Collections: Article collections published by the Public Library of Science

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Rescooped by Pedro Fernandes from Bioinformatics Software: Sequence Analysis
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Welcome! — Practical bioinformatics needs survey 1.0 documentation


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Rescooped by Pedro Fernandes from Bioinformatics Software: Sequence Analysis
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bioinformatics - fastq-dump using mkfifo to stream data - Biology Stack Exchange

bioinformatics - fastq-dump using mkfifo to stream data - Biology Stack Exchange | Bioinformatics Training | Scoop.it
Biology SE: fastq-dump using mkfifo to stream data http://t.co/UfFVwpxLxH #bioinformatics

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Rescooped by Pedro Fernandes from Bioinformatics Software: Sequence Analysis
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MUSCLE: automated multi-objective evolutionary optimization of targeted LC-MS/MS analysis

MUSCLE: automated multi-objective evolutionary optimization of targeted LC-MS/MS analysis | Bioinformatics Training | Scoop.it
ALWAYS check your acronym against other popular bioinformatics software - case in point; we now have another MUSCLE http://t.co/I6Wk1NsfNv

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METAINTER: meta-analysis of multiple regression models in genome-wide association studies

METAINTER: meta-analysis of multiple regression models in genome-wide association studies | Bioinformatics Training | Scoop.it
RT @genetics_blog: Meta-analysis of multiple regression models in GWAS http://t.co/63TFt8kQnP #bioinformatics

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Rescooped by Pedro Fernandes from Bioinformatics Software: Sequence Analysis
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The Genome Factory: Minimum standards for bioinformatics command line tools

Minimum standards for bioinformatics command line tools
by @torstenseemann
via @kbradnam and @RoyChaudhuri
http://t.co/0ftRZHMIb4

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Rescooped by Pedro Fernandes from Bioinformatics Software: Sequence Analysis
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EPGA: de novo assembly using the distributions of reads and insert size

EPGA: de novo assembly using the distributions of reads and insert size | Bioinformatics Training | Scoop.it
RT @SAGRudd: EPGA: de novo assembly using the distributions of reads and insert size http://t.co/OgsLvz71St

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Rescooped by Pedro Fernandes from Tools and tips for scientific tinkers and tailors
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Achievements and challenges in structural bioinformatics and computational biophysics

Achievements and challenges in structural bioinformatics and computational biophysics | Bioinformatics Training | Scoop.it
RT @RNajmanovich: Achievements & challenges in structural bioinformatics & computational biophysics w/ @pebourne http://t.co/1zjlsdGoWu htt…

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Rescooped by Pedro Fernandes from Bioinformatics Software: Sequence Analysis
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Bacteria’s Game of ‘Telephone’ Foils Microbiologists’ Eavesdropping - ScienceBlog.com

Bacteria’s Game of ‘Telephone’ Foils Microbiologists’ Eavesdropping - ScienceBlog.com | Bioinformatics Training | Scoop.it
December 8, 2014 Health While human families are easily illustrated as a tree, bacterial families look more like a heap of branches. Scientists are trying to trace the connections between …

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https://python.g-node.org/wiki/

Pedro Fernandes's insight:
Advanced Scientific Programming in Python

a Summer School by the G-Node, the Bernstein Center for Computational
Neuroscience Munich and the Graduate School of Systemic Neurosciences

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