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bioTheranostics To Present Data on CancerTYPE ID and Breast Cancer Index at 2013 ASCO Annual Meeting | bioTheranostics

bioTheranostics To Present Data on CancerTYPE ID and Breast Cancer Index at 2013 ASCO Annual Meeting | bioTheranostics | Bioinformatics Training | Scoop.it
Data from 11 studies demonstrate the clinical utility and cost-effectiveness of company’s molecular tests for cancer of unknown primary and breast cancer
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Bioinformatics Training
Bioinformatics, blended with education and health sciences subjects
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Biology Students Join Hundreds of Undergraduates Across Nation to Co-Author Genomics Research Paper

Biology Students Join Hundreds of Undergraduates Across Nation to Co-Author Genomics Research Paper | Bioinformatics Training | Scoop.it
Pedro Fernandes's insight:

Unusual learning experiment ends with a co-authored research paper submission

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Integrating alignment-based and alignment-free sequence similarity measures for biological sequence classification

Integrating alignment-based and alignment-free sequence similarity measures for biological sequence classification | Bioinformatics Training | Scoop.it

Via Chris Upton + helpers
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Fast principal components analysis reveals independent evolution of ADH1B gene in Europe and East Asia

Fast principal components analysis reveals independent evolution of ADH1B gene in Europe and East Asia | Bioinformatics Training | Scoop.it
Fast principal components analysis reveals independent evolution of ADH1B gene in Europe and East Asia Kevin J Galinsky , Gaurav Bhatia , Po-Ru Loh , Stoyan Georgiev , Sayan Mukherjee , Nick J Patt...

Via Mel Melendrez-Vallard
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Procrustes Analyses in R

Procrustes Analyses in R | Bioinformatics Training | Scoop.it
Procrustes transformations (i.e. a form of multidimensional scaling that allows the comparison of two data sets) have been used extensively in recent literature to assess the similarity of geograph...

Via Mel Melendrez-Vallard
Pedro Fernandes's insight:

See aso: http://www.molecularecologist.com/2012/09/genes-in-space/

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Frontiers | A review on computational systems biology of pathogen–host interactions | Infectious Diseases

Pathogens manipulate the cellular mechanisms of host organisms via Pathogen-Host Interactions (PHIs) in order to take advantage of the capabilities of host cells, leading to infections.

Via burkesquires
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Rescooped by Pedro Fernandes from Bioinformatics Software: Sequence Analysis
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An evaluation of the accuracy and speed of metagenome analysis tools

bioRxiv - the preprint server for biology, operated by Cold Spring Harbor Laboratory, a research and educational institution

Via Mel Melendrez-Vallard
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SYSTEMS BIOLOGY 101: On Being Interdisciplinary

SYSTEMS BIOLOGY 101: On Being Interdisciplinary | Bioinformatics Training | Scoop.it
In describing systems biology and the distinguishing characteristics of ISB’s approach, we always emphasize how our lab groups are intentionally and necessarily interdisciplinary.
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On publishing software

On publishing software | Bioinformatics Training | Scoop.it
This post is a response to Titus and Daniel's blog posts on whether published software should be re-useable, and covers some elements of an argument I had with Aylwyn on Twitter. What is the purpos...

Via Chris Upton + helpers
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Friendly Viruses Protect Us Against Bacteria

Friendly Viruses Protect Us Against Bacteria | Bioinformatics Training | Scoop.it
Viruses in mucus may be important line of defense against disease

Via Kenzibit
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Mapping KEGG pathway names to IDs using KEGG.db package

Mapping KEGG pathway names to IDs using KEGG.db package | Bioinformatics Training | Scoop.it
#bioinformatics Mapping KEGG pathway names to IDs using KEGG.db package http://t.co/y8ZVv2Icfx

Via Mel Melendrez-Vallard
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CoMeta: Classification of Metagenomes Using k -mers

CoMeta: Classification of Metagenomes Using  k -mers | Bioinformatics Training | Scoop.it
Nowadays, the study of environmental samples has been developing rapidly. Characterization of the environment composition broadens the knowledge about the relationship between species composition and environmental conditions.

Via Mel Melendrez-Vallard
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ScaffMatch: Scaffolding Algorithm Based on Maximum Weight Matching « Homolog.us – Bioinformatics

ScaffMatch: Scaffolding Algorithm Based on Maximum Weight Matching « Homolog.us – Bioinformatics | Bioinformatics Training | Scoop.it
A new scaffolding paper is published in Bioinformatics.
MOTIVATION:
Next-generation high-throughput sequencing (HTS) has become a state-of-the-art technique in genome assembly. Scaffolding is one of the main stages of the assembly pipeline.

Via Mel Melendrez-Vallard
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To prevent the next Ebola, scientists try to catch new viruses before they break out

To prevent the next Ebola, scientists try to catch new viruses before they break out | Bioinformatics Training | Scoop.it
With the Ebola outbreak not yet behind us, global health workers are already scrambling to prevent what could be the next big outbreak of an emerging disease caused by a virus that jumped from animals into humans.

Via Kenzibit
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Genetically Modify Your Own Frankenbugs, No Lab Necessary

Genetically Modify Your Own Frankenbugs, No Lab Necessary | Bioinformatics Training | Scoop.it
We often think of bacteria as something bad, but switch a few genes here and there and they have the possibility to detect cancer, prevent mosquitos from..
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Lecture 1: Applications of Python in Bioinformatics: Visualizing Protein

Applications of Python in Bioinformatics: Visualizing Protein. PDB ID: 1QLZ Python 2.7 OS: Ubuntu 14.04 Extra Libraries: Matplotlib, mpl_toolkits, numpy(will ...
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Genome Biology | Abstract | Temporal and technical variability of human gut metagenomes

Metagenomics has become a prominent approach for exploring the role of the gut microbiota in human health.

Via Mel Melendrez-Vallard
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Introgression Browser: High throughput whole-genome SNP visualization

Introgression Browser: High throughput whole-genome SNP visualization | Bioinformatics Training | Scoop.it
Introgression Browser: High throughput whole-genome SNP visualization Saulo Alves Aflitos, Gabino Sanchez-Perez, Dick de Ridder, Paul Fransz, Eric Schranz, Hans de Jong, Sander Peters (Submitted on...

Via Mel Melendrez-Vallard
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Genomics, Big Data, and Medicine Seminar Series – George Church

George Church, Professor, Genetics at Harvard Medical School and Director, PersonalGenomes.org, speaks on "Why Big Data Is Easier than Little Data.
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ISB Q&A: High School Science Teachers

ISB Q&A: High School Science Teachers | Bioinformatics Training | Scoop.it
From left to right: High school teachers Tami Caraballo and Jennifer Duncan-Taylor work with ISB’s Claudia Ludwig, Baliga Lab Education Program Manager, to learn about ocean acidification, cancer cells, and biofuel.
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Artificial Intelligence helps mold future of genomics

J. Craig Venter Institute CEO J. Craig Venter discusses human longevity and where science is taking us. Watch Maria Bartiromo talk about Strategy on Opening ...
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Retroviral influence on human embryonic development

Retroviral influence on human embryonic development | Bioinformatics Training | Scoop.it
Some of the thousands of human endogenous retroviral genomes are activated during human embryogenesis, suggesting that they may play a role in development.

Via Kenzibit
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The Non-parametric Bootstrap as a Bayesian Model

The Non-parametric Bootstrap as a Bayesian Model | Bioinformatics Training | Scoop.it
The non-parametric bootstrap was my first love. I was lost in a muddy swamp of zs, ts and ps when I first saw her. Conceptually beautiful, simple to implement, easy to understand (I thought back then, at least).

Via Mel Melendrez-Vallard
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Rescooped by Pedro Fernandes from Bioinformatics Software: Sequence Analysis
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edgeRun: an R package for sensitive, functionally relevant differential expression discovery using an unconditional exact test

edgeRun: an R package for sensitive, functionally relevant differential expression discovery using an unconditional exact test | Bioinformatics Training | Scoop.it
edgeRun: an R package for sensitive, functionally relevant differential expression discovery using an uncondit... http://t.co/zl8zthB67b

Via Mel Melendrez-Vallard
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Traning programe on31st march 2015

Traning programe on31st march 2015 | Bioinformatics Training | Scoop.it
BIOINFORMATICS IN MICROBIAL VESICULAR ARBUSCULAR MYCORRHIZA (VAM) RESEARCH.
Link: http://t.co/fx7lh37vPy

Via Jean-Michel Ané
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Cambrian Genomics has found a way to radically reduce the cost of making DNA, enabling

Cambrian Genomics has found a way to radically reduce the cost of making DNA, enabling anyone to design an organism. I've seen this movie before. We all ...
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