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Scooped by Dr. Stefan Gruenwald onto bioinformatics-databases |
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I just learned about this one: ROSALIND is a really cool concept in learning bioinformatics. You are given problems of increasing difficulty to solve. Start with nucleotide counting (trivial) and end with genome assembly (not so trivial). To solve a problem, you download a sample data set, write your code and debug it. Once you think you are ready, you have a time limit to solve and provide an answer for the actual problem dataset. If you mess up, there is a timed new dataset to download. This thing is coder-addictive. Currently in Beta, but a lot of fun and seems stable. Via Marthèlize Tredoux Delete the scoop?
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Jek Zhg's comment,
May 14, 4:55 AM
Thank you all, I know there are lots of tech resources,.but this site was blocked in our country.
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May 18, 1:03 PM
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Analysis of microbial genomes often requires the general organization and comparison of tens to thousands of genomes both from public repositories and unpublished sources. MicrobeDB provides a foundation for such projects by the automation of downloading published, completed bacterial and archaeal genomes from key sources, parsing annotations of all genomes (both public and private) into a local database, and allowing interaction with the database through an easy to use programming interface. Via Chris Upton + helpers Delete the scoop?
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Background: Via IPM Lab Delete the scoop?
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The Rat Genome Database houses genomic, genetic, functional, physiological, pathway and disease data for the laboratory rat as well as comparative data for mouse and human. Delete the scoop?
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http://www.talendesign.org/mojohand_main.php
Web-based program Mojo Hand for designing TAL and TALEN constructs for genome editing applications (www.talendesign.org). The precise algorithm and its implementation is described. The features of Mojo Hand include (1) automatic download of genomic data from the National Center for Biotechnology Information, (2) analysis of any DNA sequence to reveal pairs of binding sites based on a user-defined template, (3) selection of restriction enzyme recognition sites in the spacer between the TAL monomer binding sites including options for the selection of restriction enzyme suppliers, and (4) output files designed for subsequent TALEN construction using the Golden Gate assembly method. Via dromius Delete the scoop?
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MicroRNAs constitute a hitherto unexplored layer of genetic interactions between the virus and the host. The regulatory impact of microRNAs is huge because a single microRNA can regulate multiple transcripts and multiple microRNAs can regulate a single transcript. Delete the scoop?
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Protease, RT, and integrase mutations can be entered using either the text box or pull down menus. Via Ken Yaw Agyeman-Badu Delete the scoop?
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The Pseudomonas Genome Database is a database of genomic data and associated annotations for Pseudomonas aeruginosa and other Pseudomonas species genomes. Delete the scoop?
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The database of Genotypes and Phenotypes (dbGaP) was developed to archive and distribute the results of studies that have investigated the interaction of genotype and phenotype. Delete the scoop?
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MGI: the international database resource for the laboratory mouse, providing integrated genetic, genomic, and biological data for researching human health and disease. Delete the scoop?
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Database for Saccharomyces cerevisiae gene fusions to green fluorescent protein (GFP) Delete the scoop?
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