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Rescooped by xulei from Plant Biology Teaching Resources (Higher Education)
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The Plant Cell Reviews Dynamic Aspects of Plant Hormone Signaling and Crosstalk

The Plant Cell Reviews Dynamic Aspects of Plant Hormone Signaling and Crosstalk | Study | Scoop.it

The Roles of ROS and ABA in Systemic Acquired Acclimation

Ron Mittler and Eduardo Blumwald

Plant Cell 2015 tpc.114.133090; First Published on January 20, 2015; doi:10.1105/tpc.114.133090 OPEN

http://www.plantcell.org/content/early/2015/01/20/tpc.114.133090.abstract

 

SCFTIR1/AFB-Based Auxin Perception: Mechanism and Role in Plant Growth and Development

Mohammad Salehin, Rammyani Bagchi, and Mark Estelle

Plant Cell 2015 tpc.114.133744; First Published on January 20, 2015; doi:10.1105/tpc.114.133744

http://www.plantcell.org/content/early/2015/01/20/tpc.114.133744.abstract

 

The PB1 Domain in Auxin Response Factor and Aux/IAA Proteins: A Versatile Protein Interaction Module in the Auxin Response

Tom J. Guilfoyle

Plant Cell 2015 tpc.114.132753; First Published on January 20, 2015; doi:10.1105/tpc.114.132753 OPEN

http://www.plantcell.org/content/early/2015/01/20/tpc.114.132753.abstract

 

PIN-Dependent Auxin Transport: Action, Regulation, and Evolution

Maciek Adamowski and Jiří Friml

Plant Cell 2015 tpc.114.134874; First Published on January 20, 2015; doi:10.1105/tpc.114.134874

http://www.plantcell.org/content/early/2015/01/20/tpc.114.134874.abstract

 

The Yin-Yang of Hormones: Cytokinin and Auxin Interactions in Plant Development

G. Eric Schaller, Anthony Bishopp, and Joseph J. Kieber

Plant Cell 2015 tpc.114.133595; First Published on January 20, 2015; doi:10.1105/tpc.114.133595

http://www.plantcell.org/content/early/2015/01/20/tpc.114.133595.abstract


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Quick learning of CRISPR/Cas9 - YouTube

What is CRISPR/Cas9? How does CRISPR system work? What is needed to perform genome engineering in your lab? This short video introduces the basics of this no...

Via Horizon Discovery
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Rescooped by xulei from Writing Matters
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3 Ways to Stick to a Writing Schedule | Everything's Temporary

3 Ways to Stick to a Writing Schedule | Everything's Temporary | Study | Scoop.it

Via Elaine J Roberts, Ph.D.
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Elaine J Roberts, Ph.D.'s curator insight, October 3, 2014 11:05 AM

I am a list maker. I often lose my list and too frequently I have lists of lists, but I make lists. And I write stuff down or somehow record it as it occurs to me--whatever the ideas--using scraps of paper, sticky notes, Evernote, voice messages to myself. Seriously. And then later, when I have time to sift, filter, and think through, I discard some things, make connections with others, and post others somewhere while I continue to think about them.


What works for me might not work for you. My friend Vicki Davis (@coolcatteacher) has a candle at her writing place. She lights it with a match and leaves the matches on the candle holder. At the end of the week, she should have at least five matches to help her hold herself accountable for writing at least five days a week. You'll figure out what works best for you and how it works best for you. Now figuring out what to say and how to say, well, that's a completely different story.

Rescooped by xulei from Writing, Editing, Technical Science Writing, Proofreading
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Proofreading Tips - Four Effective Proofreading Tips

Proofreading should never be treated as an optional extra it must always be treatd as an integral part of the writing process.

Via Linda Hilbert
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Bioinformatics and computational biology solutions using r and bioconductor

Bioinformatics and computational biology solutions using r and bioconductor | Study | Scoop.it
Data researchers, data analysts, statisticians with computer knowledge.
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normalization RNA-seq data between different types of libraries

normalization RNA-seq data between different types of libraries | Study | Scoop.it
RT @BioStarQuestion: normalization RNA-seq data between different types of libraries http://t.co/qRIUos9dxn
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Next-generation sequencing of small RNAs from i... [BMC Genomics. 2014] - PubMed - NCBI

PubMed comprises more than 23 million citations for biomedical literature from MEDLINE, life science journals, and online books. Citations may include links to full-text content from PubMed Central and publisher web sites.
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Polyester: simulating RNA-seq datasets with differential transcript expression

Polyester: simulating RNA-seq datasets with differential transcript expression | Study | Scoop.it
bioRxiv - the preprint server for biology, operated by Cold Spring Harbor Laboratory, a research and educational institution (Polyester: simulating RNA-seq datasets with differential transcript expression [NEW RESULTS]
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iRAP - an integrated RNA-seq Analysis Pipeline

iRAP - an integrated RNA-seq Analysis Pipeline | Study | Scoop.it
bioRxiv - the preprint server for biology, operated by Cold Spring Harbor Laboratory, a research and educational institution (RT @FGED: From bioRxiv | iRAP - an integrated RNA-seq Analysis Pipeline | http://t.co/TRl9qf82DQ)...
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A Quick Guide for Developing Effective Bioinformatics Programming Skills

A Quick Guide for Developing Effective Bioinformatics Programming Skills | Study | Scoop.it
PLOS Computational Biology is an open-access (#PLOSCompBio: A Quick Guide for Developing Effective Bioinformatics Programming Skills http://t.co/uWCp8qSTX4)...
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Plant Cell: mRNA and Small RNA Transcriptomes R...

Plant Cell: mRNA and Small RNA Transcriptomes R... | Study | Scoop.it
"Allohexaploid common wheat (Triticum aestivum) arose as a hybrid between allo-tetraploid Triticum turgidum and diploid Aegilops tauschii and is known to out-compete its progenitors in a number of traits, including broader adaptability to various...
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Estimates of allele-specific expression in Drosophila with a single genome sequence and RNA-seq data

Estimates of allele-specific expression in Drosophila with a single genome sequence and RNA-seq data | Study | Scoop.it
Estimates of allele-specific expression in Drosophila with a single genome sequence and RNA-seq ...: This requ... http://t.co/fOBIFigsGl
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M1ZZKCihA3

Did you know that VeriQuest #qPCR master mixes are ideal for validating your microarray data? Here’s why: http://t.co/M1ZZKCihA3
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Rescooped by xulei from CRISPR
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Genome Editing with CRISPR-Cas9 - YouTube

This animation depicts the CRISPR-Cas9 method for genome editing – a powerful new technology with many applications in biomedical research, including the pot...

Via msemporda, Horizon Discovery
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msemporda's curator insight, November 6, 2014 12:46 PM

Genetic modification & the use of this technology to do so is at the leading edge of science today. Cellular mechanisms of DNA expression are now routinely being modified & tailored to assist basic researchers, drug development & medical discovery. 

 

It is with this biologic programming knowledge, along with the varied techniques to effect the desired result, that the promise of personalized medicine & universal treatments will emerge.

 

Want to study a disease model in an animal - modify a pre-embryo's genetic code & produce your subject. Need to address a cellular pathway issue in a disease state, discover & insert. Challenged by the need to address multiple components of the body's program, send in the Editor...

 

Synthetic Biology - a new dawn has begun...

 

Cheers 

Rescooped by xulei from CRISPR
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In vivo engineering chromosomal rearrangements with CRISPR/Cas9 system.

In vivo engineering chromosomal rearrangements with CRISPR/Cas9 system. | Study | Scoop.it
Researchers use CRISPR/ Cas9 genome editing technology in vivo for the first time to engineer chromosomal rearrangements.

Via Horizon Discovery
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Rescooped by xulei from Plant Biology Teaching Resources (Higher Education)
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How to read a scientific paper / How to read a paper in Plant Physiology

How to read a scientific paper / How to read a paper in Plant Physiology | Study | Scoop.it

We posted these last year and have had excellent feedback.

"How to Read a Scientific Paper"

(https://journalaccess.aspb.org/ReadaSciPaper/How%20to%20Read%20a%20Scientific%20Paper%20M%20Williams%20Mar%202013.pdf)

 

"How to read a paper in Plant Physiology"

https://journalaccess.aspb.org/CaseStudy/CaseStudy%20for%20How%20to%20Read%20a%20Sci%20Paper%20M%20Williams%20Mar%202013.pdf


Via Mary Williams
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Rescooped by xulei from cereal bioinformatics
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A field guide to whole-genome sequencing, assembly and annotation

A field guide to whole-genome sequencing, assembly and annotation | Study | Scoop.it

Genome sequencing projects were long confined to biomedical model organisms and required the concerted effort of large consortia. Rapid progress in high-throughput sequencing technology and the simultaneous development of bioinformatic tools have democratized the field. It is now within reach for individual research groups in the eco-evolutionary and conservation community to generate de novo draft genome sequences for any organism of choice. Because of the cost and considerable effort involved in such an endeavour, the important first step is to thoroughly consider whether a genome sequence is necessary for addressing the biological question at hand. Once this decision is taken, a genome project requires careful planning with respect to the organism involved and the intended quality of the genome draft. Here, we briefly review the state of the art within this field and provide a step-by-step introduction to the workflow involved in genome sequencing, assembly and annotation with particular reference to large and complex genomes. This tutorial is targeted at scientists with a background in conservation genetics, but more generally, provides useful practical guidance for researchers engaging in whole-genome sequencing projects.


Via Francis Martin, Nathan Watson-Haigh
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Rescooped by xulei from Bioinformatics Software: Sequence Analysis
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Detecting differential protein expression in large-scale population proteomics

Detecting differential protein expression in large-scale population proteomics | Study | Scoop.it

Via Mel Melendrez-Vallard
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Finding significantly differentiall expressed genes in RNA-Seq with one sample

Finding significantly differentiall expressed genes in RNA-Seq with one sample | Study | Scoop.it
CT @rnomics/bioinfo Finding significantly differentiall expressed genes in #RNA-Seq with one sample:... http://t.co/negqxuMhoH
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Identification, annotation and visualisation of extreme changes in splicing from RNA-seq experiments with SwitchSeq

Identification, annotation and visualisation of extreme changes in splicing from RNA-seq experiments with SwitchSeq | Study | Scoop.it
bioRxiv - the preprint server for biology, operated by Cold Spring Harbor Laboratory, a research and educational institution (Identification, annotation and visualisation of extreme changes in splicing from RNA-seq experiments with Switch...
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Plant Cells: Crash Course Biology #6 - Oi Veh

Plant Cells: Crash Course Biology #6 - Oi Veh | Study | Scoop.it
Share it now!Share it now!Hank describes why plants are so freaking amazing – discussing their evolution, and how their cells are both similar to & different from animal cells.
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Summarizing and correcting the GC content bias in high-throughput sequencing

Summarizing and correcting the GC content bias in high-throughput sequencing | Study | Scoop.it
Summarizing and correcting the GC content bias in high-throughput sequencing - #Bioinformatics http://t.co/KR202uJnc3
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A comparative study of techniques for differential expression analysis on RNA-Seq data

A comparative study of techniques for differential expression analysis on RNA-Seq data | Study | Scoop.it
bioRxiv - the preprint server for biology, operated by Cold Spring Harbor Laboratory, a research and educational institution (A comparative study of techniques for differential expression analysis on RNA-Seq data http://t.co/c93WKLEFCQ)...
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rsgcc 1.0.6 – Gini methodology-based correlation and Clustering analysis of Microarray and RNA-Seq Gene Expression data

rsgcc 1.0.6 – Gini methodology-based correlation and Clustering analysis of Microarray and RNA-Seq Gene Expression data | Study | Scoop.it
rsgcc 1.0.6
:: DESCRIPTION

rsgcc is an R package that can be utilized as an alternative option for biologists to perform clustering analyses of gene expression patterns or transcriptional network analyses.
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